View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_307 (Length: 250)
Name: NF7850A_low_307
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_307 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30841487 - 30841252
Alignment:
| Q |
1 |
gcggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagctcacacctggagagaagattgttgtgtaacaa |
100 |
Q |
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| T |
30841487 |
gcggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagcttacacctggagagaagattgtagtgtaacaa |
30841388 |
T |
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| Q |
101 |
gcgtgagttggaagttgcaagtatgagttagacttagaagtat-acattacttagaaaagtgaaggtagagcacttataaataagattactcataaacct |
199 |
Q |
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| T |
30841387 |
ccgtgagttggaagttgcaagtatgagttagacttagaagtataacattacttagaaaagtgaaggttgaacacttataaataagatgactcataaacct |
30841288 |
T |
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| Q |
200 |
annnnnnnaaggttttgggtaaagatgtgatgtcca |
235 |
Q |
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| T |
30841287 |
atttttttaaggttttgggtaaagatgcggtgtcca |
30841252 |
T |
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