View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_308 (Length: 250)
Name: NF7850A_low_308
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_308 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 20489648 - 20489881
Alignment:
| Q |
1 |
aatttccaaccactggcagattcaagtaattagctgtaatagtagaaatatagattagtataattaatattaatagatagaaaatgtcttgtcatgtaaa |
100 |
Q |
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| T |
20489648 |
aatttccaaccactggcagattcaagtaattagctgtaatagtagaaatatagattagtataattaatattaatagatagaaaatgtcttgtcatgtaaa |
20489747 |
T |
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| Q |
101 |
tcttcaaatttttctttaagtatcatcaaggaaggtacgtcatatgtcatgaagtcccaccaatggagcaaaggataatggtagagtagccttttccagt |
200 |
Q |
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| T |
20489748 |
tcttcaaatttttctttaagtaaaatcaaggaag----gtcatatgtcatgaagtcccaccaatggagcaaaggataatggtagagtagccttttccagt |
20489843 |
T |
|
| Q |
201 |
gcaaacaactttaagaactacacatgcatacttagtat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20489844 |
gcaaacaactttaagaactacacatgcatacttagtat |
20489881 |
T |
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