View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_309 (Length: 250)

Name: NF7850A_low_309
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_309
NF7850A_low_309
[»] chr5 (2 HSPs)
chr5 (76-244)||(41222154-41222322)
chr5 (3-78)||(41222675-41222752)
[»] chr8 (1 HSPs)
chr8 (94-223)||(13375861-13375997)
[»] chr6 (3 HSPs)
chr6 (94-223)||(16985223-16985359)
chr6 (111-148)||(16795006-16795043)
chr6 (163-223)||(16779031-16779091)
[»] chr3 (3 HSPs)
chr3 (157-223)||(38942998-38943064)
chr3 (112-223)||(7055522-7055640)
chr3 (157-223)||(38941597-38941663)
[»] scaffold0133 (1 HSPs)
scaffold0133 (183-223)||(6375-6415)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 76 - 244
Target Start/End: Complemental strand, 41222322 - 41222154
Alignment:
Q  76 ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagctagcgaccttatctttggaaactcac 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  41222322 ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaatctagcgaccttatctttcgaaactcac 41222223  T
Q  176 tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttat 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41222222 tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttat 41222154  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 41222752 - 41222675
Alignment:
Q  3 ccaagaatatttttataaagtgaccatatatttaggatatatat--cgtgtcacaataaatttacattacattaattg 78  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||  ||||| ||||||||||||||||||||||||||    
T  41222752 ccaaaaatatttttatgaagtgaccatatatttaagatatatatatcgtgttacaataaatttacattacattaattg 41222675  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 13375861 - 13375997
Alignment:
Q  94 caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagc-------tagcgaccttatctttggaaactcactgatatgtaat 186  Q
    |||||||||| || |||||||||||||| |||||| ||||||||||||||||||||       ||| ||||||| ||| |||||| ||||||| | ||||    
T  13375861 caacatagagcaactaacaatacttaacctttgcaagtttcggagttgctgaaagctgtctggtagtgaccttaacttcggaaacccactgatttttaat 13375960  T
Q  187 tcttgaagagaagtcatggcaccctaccagtccggca 223  Q
      |||||||| ||||||||||||| ||||||| ||||    
T  13375961 ctttgaagagtagtcatggcacccaaccagtctggca 13375997  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 16985223 - 16985359
Alignment:
Q  94 caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgtaat 186  Q
    |||||||| | ||| || |||| ||||||||||||  ||||||||||||||||||||       || || |||| ||||||||| ||| |||| | ||||    
T  16985223 caacatagggcaatcaataataattaacttttgcaaatttcggagttgctgaaagctgtctggtagtgaacttaactttggaaagtcaatgatgtataat 16985322  T
Q  187 tcttgaagagaagtcatggcaccctaccagtccggca 223  Q
    |||||||||||||||||||||||| | ||||| ||||    
T  16985323 tcttgaagagaagtcatggcacccaaacagtctggca 16985359  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 16795006 - 16795043
Alignment:
Q  111 caatacttaacttttgcatgtttcggagttgctgaaag 148  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  16795006 caatacttaactcttgcaagtttcggagttgctgaaag 16795043  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 16779031 - 16779091
Alignment:
Q  163 tttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 223  Q
    ||||||||||||  ||| | |||| ||||||||||||||||||||||| | ||||| ||||    
T  16779031 tttggaaactcatagatgtctaatacttgaagagaagtcatggcacccaaacagtctggca 16779091  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 38942998 - 38943064
Alignment:
Q  157 cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 223  Q
    |||| ||| |||||| ||||||| ||||||  |||||||||||||||||||||| ||||||||||||    
T  38942998 cttaacttcggaaacccactgatttgtaatctttgaagagaagtcatggcacccaaccagtccggca 38943064  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 7055640 - 7055522
Alignment:
Q  112 aatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgtaattcttgaagagaagtcatg 204  Q
    ||||||||||||||| | |||| |||||||||||| |||       |||||||||| | | ||||||  |  ||| |||||| |||||||||||||||||    
T  7055640 aatacttaacttttgtaagttttggagttgctgaatgctgtctggtagcgaccttaacatcggaaacctagagatttgtaatacttgaagagaagtcatg 7055541  T
Q  205 gcaccctaccagtccggca 223  Q
    |||||| ||||||||||||    
T  7055540 gcacccaaccagtccggca 7055522  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 38941663 - 38941597
Alignment:
Q  157 cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 223  Q
    |||| ||||||||||| |  ||| |||||| ||||||||||||||||||||||| ||||||| ||||    
T  38941663 cttaactttggaaacttaaggatgtgtaatacttgaagagaagtcatggcacccaaccagtctggca 38941597  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 6375 - 6415
Alignment:
Q  183 taattcttgaagagaagtcatggcaccctaccagtccggca 223  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  6375 taatacttgaagagaagtcatggcacccaaccagtccggca 6415  T

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