View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_314 (Length: 249)

Name: NF7850A_low_314
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_314
NF7850A_low_314
[»] chr5 (7 HSPs)
chr5 (1-244)||(29013081-29013325)
chr5 (1-199)||(29365815-29366013)
chr5 (71-230)||(24085110-24085269)
chr5 (149-244)||(29014953-29015048)
chr5 (159-215)||(11095406-11095462)
chr5 (166-216)||(10391444-10391494)
chr5 (173-213)||(34117473-34117513)
[»] chr6 (1 HSPs)
chr6 (162-216)||(10016725-10016779)
[»] chr4 (2 HSPs)
chr4 (167-218)||(24193632-24193683)
chr4 (163-216)||(28615436-28615489)
[»] chr2 (3 HSPs)
chr2 (166-216)||(41809163-41809213)
chr2 (167-215)||(787435-787483)
chr2 (160-216)||(6547991-6548047)
[»] chr7 (1 HSPs)
chr7 (163-216)||(529464-529517)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 29013325 - 29013081
Alignment:
Q  1 ttgtaaattgttggttgataactttcatatagattatggaaaaa-tgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggtttttatt 99  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||    
T  29013325 ttgtaaattgttggttcataactttcatatagattatggaaaaaatgtttctttttgtagcttgtttttttgtttctcttacgtgagtgaggtttttatt 29013226  T
Q  100 caatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgctg 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29013225 caatatgctctattgggttcaattatttagtggaaaagttgaaaactttgatttaaagtttaaggtctgtttggattggattattgaagcttatctgctg 29013126  T
Q  200 gcataaacacttgtgagttatgaagtacgaatacaaacaccaaac 244  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  29013125 gcataaacacttgtgagttatgaagtacgaacacaaacaccaaac 29013081  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 29366013 - 29365815
Alignment:
Q  1 ttgtaaattgttggttgataactttcatatagattatgg-aaaaatgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggtttttatt 99  Q
    ||||||||  ||| || ||||| |||||||||||||||| ||||||||||||||||||||||||       |||||||| | |||||||| |||||||||    
T  29366013 ttgtaaatgtttgattcataaccttcatatagattatgggaaaaatgtttctttttgtagcttgtttttttgtttctctcatgtgagtgaagtttttatt 29365914  T
Q  100 caatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgctg 199  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||    
T  29365913 caatatgctctattgggttcaactatttagtggaaaaattgaaaactttgattg-aagtttaaggtccatttggattggattattgaggcttatctgctg 29365815  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 230
Target Start/End: Complemental strand, 24085269 - 24085110
Alignment:
Q  71 gtttctcttacgtgagtgaggtttttattcaatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtt 170  Q
    |||||||||| |||| ||||||||| ||||| | |  | |||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||    
T  24085269 gtttctcttatgtgactgaggttttaattcagtttactatattgggttcaattattttgtagaaaagttgaaaacgtggattgaaagtttaaggtctgtt 24085170  T
Q  171 tggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaa 230  Q
    ||||||||||||| |||||||| |  ||| |||||||||||||||||| ||||| |||||    
T  24085169 tggattggattatagaagcttaccgactgacataaacacttgtgagttttgaagcacgaa 24085110  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 29015048 - 29014953
Alignment:
Q  149 gattgaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaatacaaacaccaaac 244  Q
    |||||||||||||||| | |||||||||||||||| |||||||| | |||| ||||||||||| |||||| ||||| |||||  || |||||||||    
T  29015048 gattgaaagtttaaggcccgtttggattggattatagaagcttaccggctgacataaacacttctgagttctgaagcacgaacccagacaccaaac 29014953  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 11095406 - 11095462
Alignment:
Q  159 ttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtga 215  Q
    |||||||||||||||| ||| ||||| |||||||||| ||| |||||||||||||||    
T  11095406 ttaaggtctgtttggactggtttatttaagcttatctactgacataaacacttgtga 11095462  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 10391494 - 10391444
Alignment:
Q  166 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 216  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  10391494 ctgtttcgattggcttatttaagcttatctgctggcataatcacttgtgag 10391444  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 34117473 - 34117513
Alignment:
Q  173 gattggattattgaagcttatctgctggcataaacacttgt 213  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  34117473 gattggcttattggagcttatctactggcataaacacttgt 34117513  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 10016779 - 10016725
Alignment:
Q  162 aggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 216  Q
    ||||||||||||||||| |||||  ||||||||| | ||||||||||||||||||    
T  10016779 aggtctgtttggattggtttatttgagcttatctacaggcataaacacttgtgag 10016725  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 24193683 - 24193632
Alignment:
Q  167 tgtttggattggattattgaagcttatctgctggcataaacacttgtgagtt 218  Q
    |||||||||||  |||||  ||||||||| ||||||||||||||||||||||    
T  24193683 tgtttggattgacttatttgagcttatctcctggcataaacacttgtgagtt 24193632  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 28615489 - 28615436
Alignment:
Q  163 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 216  Q
    |||||||||||||||  ||||| ||| |||||| || |||||||||||||||||    
T  28615489 ggtctgtttggattgacttatttaagtttatctactagcataaacacttgtgag 28615436  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 41809163 - 41809213
Alignment:
Q  166 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 216  Q
    ||||||||||||| || || |||||||| || |||||||||||||||||||    
T  41809163 ctgtttggattggttttttaaagcttatttgttggcataaacacttgtgag 41809213  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 787483 - 787435
Alignment:
Q  167 tgtttggattggattattgaagcttatctgctggcataaacacttgtga 215  Q
    ||||||||||||||||||  ||| ||||| ||||||||| |||||||||    
T  787483 tgtttggattggattattcgagcatatctactggcataagcacttgtga 787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 6548047 - 6547991
Alignment:
Q  160 taaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 216  Q
    ||||||||||||||||||  ||||| |||||||||| || ||||||  |||||||||    
T  6548047 taaggtctgtttggattgacttattcaagcttatctactagcataagaacttgtgag 6547991  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 529517 - 529464
Alignment:
Q  163 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 216  Q
    |||||| ||||||||  |||||  ||||||||| ||||||||||||||||||||    
T  529517 ggtctgattggattgacttatttgagcttatctactggcataaacacttgtgag 529464  T

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