View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_323 (Length: 249)
Name: NF7850A_low_323
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_323 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 39296413 - 39296177
Alignment:
| Q |
1 |
aggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaataagaggaaaagctgagagcgaagtgagtgtaa |
100 |
Q |
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| T |
39296413 |
aggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtgaagatgacgaataaaaggaaaagctgagagcgaagtgagtgtaa |
39296314 |
T |
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| Q |
101 |
ggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttttgatcgtgagaacaagagaataaactagccatgctat |
200 |
Q |
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| T |
39296313 |
ggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttgtgatcgtgagaacgagagaatatactagccatgctat |
39296214 |
T |
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| Q |
201 |
tgaagaaacaccgcagccactatgaattcctacaata |
237 |
Q |
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| T |
39296213 |
tgaagaaacaccgcagccactatgaattcctccaata |
39296177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 39289533 - 39289294
Alignment:
| Q |
1 |
aggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaataagaggaaaagctgagagcgaagtgagtgtaa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||| ||||||| |||||||| |
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| T |
39289533 |
aggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcaagcgaagagagtgtaa |
39289434 |
T |
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| Q |
101 |
ggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttttgatcgtgagaacaagagaataaactagccatgc |
197 |
Q |
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| T |
39289433 |
tgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataaactagccatgc |
39289334 |
T |
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| Q |
198 |
tattgaagaaacaccgcagccactatgaattcctacaata |
237 |
Q |
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| T |
39289333 |
tatcgaagaaacgccgcagccactatgaattcctccaata |
39289294 |
T |
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