View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_325 (Length: 248)
Name: NF7850A_low_325
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_325 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 15239421 - 15239189
Alignment:
| Q |
1 |
tgaagatttttcgcgcaaccaatgtcccgaaaaataagagctgttctgacataggtagaactaatggtcctaatgttgtgatgtttgttttgagtgcttc |
100 |
Q |
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| T |
15239421 |
tgaagatttttcgcgcaaccaatgtcccgaaaaataagagctgttccgacataggtaggactaatggtcctaatgttgtgatgtttgttttgagtgcttc |
15239322 |
T |
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| Q |
101 |
tccggcaacagccattaggtcttttgagagtgatacaccgacttgctttgtgtcgtcttcttcttgaaagacacagccgtaggatttgttgtctgcacct |
200 |
Q |
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| T |
15239321 |
tccggcaacagccattaggtcttttgagagtgatacaccgacttgctttgtgtcgtcttcttcttgaaagacgcagccgtaggatttgttgtctgcacct |
15239222 |
T |
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| Q |
201 |
ttgtgcgttcggacggtgtggactagttggtat |
233 |
Q |
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| T |
15239221 |
ttgtgcgttcggacggtgtggactagttggtat |
15239189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 233
Target Start/End: Complemental strand, 34053082 - 34052888
Alignment:
| Q |
39 |
agctgttctgacataggtagaactaatggtcctaatgttgtgatgtttgttttgagtgcttctccggcaacagccattaggtcttttgagagtgatacac |
138 |
Q |
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| T |
34053082 |
agctgttctgacataggaagtaccaatggaccaagtgttgtgatgttggttttcagtgcttctccggcaaccgccattaaatcttttgagagtgatacac |
34052983 |
T |
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| Q |
139 |
cgacttgcttt-gtgtcgtcttcttcttgaaagacacagccgtaggatttgttgtctgcacctttgtgcgttcggacggtgtggactagttggtat |
233 |
Q |
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| T |
34052982 |
c-aattgatttcttctcatcttcttcttggaagacacaaccatatgatctgtcgtccgcgcctttatgtgttcggacggtgtggatcagttggtat |
34052888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 48672060 - 48671999
Alignment:
| Q |
39 |
agctgttctgacataggtagaactaatggtcctaatgttgtgatgtttgttttgagtgcttc |
100 |
Q |
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| T |
48672060 |
agctgttctgaaaagggtaggaccaatggtcctagtgttgtgatgttagttttgagagcttc |
48671999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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