View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_326 (Length: 248)
Name: NF7850A_low_326
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_326 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 248
Target Start/End: Complemental strand, 33127097 - 33126872
Alignment:
| Q |
24 |
accattgagtgtaaccgtacatgtacttcacacaaaataaataaaccaattattctgattttagttaatctaagaatgtaaagatagtaaatggatttga |
123 |
Q |
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| T |
33127097 |
accattgagtgtaaccgtacatgtacttcacacaaaataaataaaccaattattctgattttagttaatctaagaatgtaaagatagtaaatggatttga |
33126998 |
T |
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| Q |
124 |
agcagttgagttgcataccgatcagtacaaaatatatattatgttaagaatatatcagatttaaaagtatcatttaatg-nnnnnnnaatgaataatctc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33126997 |
agcagttgagttgcataccgatcagtacaaaatatatattatgttaagaatatatcagatttaaaagtatcatttaatgttttttttaatgaataatctc |
33126898 |
T |
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| Q |
223 |
tttgatgtcatatatttttaaaaagt |
248 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33126897 |
tttgatgtcatatatttttaaaaagt |
33126872 |
T |
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