View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_331 (Length: 247)
Name: NF7850A_low_331
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_331 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 31251746 - 31251984
Alignment:
| Q |
9 |
aaaagaaacgggagatttcatattaaataatnnnnnnnnnnnntattaaaccgactcttcc-tcnnnnnnntaacattaaacctgttattttacatacta |
107 |
Q |
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| T |
31251746 |
aaaagaaacgggagatttcatattaaataataaaaaaaaaaa-tattaaaccgactcttccctcaaaaaaataacattaaacctgttattttacatacta |
31251844 |
T |
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| Q |
108 |
agtcatnnnnnnnnnnnnnncaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctaaatgtcattcatacacaaaagtggtgatt |
207 |
Q |
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| T |
31251845 |
agtcataaaaaggaaaaaaacaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaattctagatgtcattcatacacaaaagtggtgatt |
31251944 |
T |
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| Q |
208 |
tattagggttagcattcaaaaactgcataaaacttctgag |
247 |
Q |
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| T |
31251945 |
tattaggggtagcattccaaaactgcataaaacttctgag |
31251984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 25815278 - 25815159
Alignment:
| Q |
128 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctaaatgtcattcatacacaaaagtggtgatttattagggttagcattcaaa |
227 |
Q |
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| T |
25815278 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
25815179 |
T |
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| Q |
228 |
aactgcataaaacttctgag |
247 |
Q |
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| T |
25815178 |
aactgcataaaacttctgag |
25815159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 25815404 - 25815373
Alignment:
| Q |
8 |
gaaaagaaacgggagatttcatattaaataat |
39 |
Q |
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| T |
25815404 |
gaaaagaaacgggagatttcatattaaataat |
25815373 |
T |
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