View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_338 (Length: 246)

Name: NF7850A_low_338
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_338
NF7850A_low_338
[»] chr2 (1 HSPs)
chr2 (8-246)||(17922700-17922938)
[»] chr6 (6 HSPs)
chr6 (8-246)||(12949286-12949525)
chr6 (8-246)||(12958746-12958984)
chr6 (8-246)||(12907858-12908096)
chr6 (8-196)||(12900241-12900429)
chr6 (8-246)||(12932947-12933185)
chr6 (170-246)||(18555914-18555990)
[»] chr5 (17 HSPs)
chr5 (20-230)||(10612411-10612621)
chr5 (19-240)||(10746321-10746541)
chr5 (26-240)||(10605459-10605672)
chr5 (8-188)||(10565692-10565872)
chr5 (32-126)||(7193719-7193813)
chr5 (39-177)||(10739777-10739915)
chr5 (8-124)||(10581684-10581800)
chr5 (39-147)||(10762222-10762330)
chr5 (48-136)||(10716381-10716469)
chr5 (39-134)||(10659480-10659575)
chr5 (32-112)||(10651619-10651699)
chr5 (8-111)||(10587895-10587998)
chr5 (38-124)||(10551520-10551606)
chr5 (20-136)||(9827352-9827468)
chr5 (20-136)||(9835721-9835837)
chr5 (48-136)||(19605259-19605347)
chr5 (50-133)||(10559629-10559712)
[»] chr3 (1 HSPs)
chr3 (38-138)||(31466548-31466648)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 17922938 - 17922700
Alignment:
Q  8 agatggacatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaaga 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922938 agatggaaatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaaga 17922839  T
Q  108 atgaatattgtggatgtcactagagagcttaccacaatccagaaggtctttctagatggtgagatgaactgatattcttataagtttatttcgatcataa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922838 atgaatattgtggatgtcactagagagcttaccacaatccagaaggtctttctagatggtgagatgaactgatattcttataagtttatttcgatcataa 17922739  T
Q  208 ccaacgcattaattgcttatggaattagaattttatttt 246  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17922738 ccaacgcattaattgcttatggaattagaattttatttt 17922700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 12949286 - 12949525
Alignment:
Q  8 agatggacatcatgagattcttcttccaactgtagaggagtgcttagtttccc-tttttaggattggacttttttgttcattggaatcaccaaaagaaag 106  Q
    ||||||| |||||||||||||| |||||||| |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||    
T  12949286 agatggaaatcatgagattcttattccaactatagaagagtgctcagtttcccctttttaggattggacttttttgttcattggaatcatcaaatgaaag 12949385  T
Q  107 aatgaatattgtggatgtcactagagagcttaccacaatccagaaggtctttctagatggtgagatgaactgatattcttataagtttatttcgatcata 206  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||  ||||||    
T  12949386 aatgaatattgtggatgtcactagagagcttaccacaatccataaggtctttctagctggtgagatgaactgatattcttatatgcttatttgaatcata 12949485  T
Q  207 accaacgcattaattgcttatggaattagaattttatttt 246  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  12949486 accaactcattaattgcttatgaaattagaattttatttt 12949525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 12958746 - 12958984
Alignment:
Q  8 agatggacatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaaga 107  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  12958746 agatggaaatcatgagattcttattccaactgtagaggagtgcttagtttcactttttaggattggacttttatgttcattggaatcaccaaaagaaaga 12958845  T
Q  108 atgaatattgtggatgtcactagagagcttaccacaatccagaaggtctttctagatggtgagatgaactgatattcttata----agtttatttcgatc 203  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    |||||||||||     ||||||||  |||    
T  12958846 atgaatattgtcgatgtcactagagagcttaccacaatccagaaggtctttctagctggtgagatga----atattcttatatgtttgtttatttgaatc 12958941  T
Q  204 ataaccaacgcattaattgcttatggaattagaattttatttt 246  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||    
T  12958942 ataactaactcattaattggttatggaattagaattttatttt 12958984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 12907858 - 12908096
Alignment:
Q  8 agatggacatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaaga 107  Q
    |||||||  ||||||||||||| |||||| ||||||||||||||||  ||| |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  12907858 agatggaattcatgagattcttattccaaatgtagaggagtgcttaacttcactttttaggattggacttttatgttcattggaatcaacaaaagaaaga 12907957  T
Q  108 atgaatattgtggatgtcactagagagcttaccacaatccagaaggtctttctagatggtgagatgaactgatattcttataagtttatttcgatcataa 207  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||  ||||||   |||||||    
T  12907958 atgaatattgtagatgtcaatagagagcttaccacaatccagaaggtctttttagctggtgagatgaactgatattcctatatctttattagaatcataa 12908057  T
Q  208 ccaacgcattaattgcttatggaattagaattttatttt 246  Q
    | |   ||||||||||||||||||||||| |||||||||    
T  12908058 ctacgtcattaattgcttatggaattagagttttatttt 12908096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 12900241 - 12900429
Alignment:
Q  8 agatggacatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaaga 107  Q
    ||||||| |||||||||||| | |||||||| |||| |||||||||||||| ||| ||||||||| |||||| ||||| |||||||||||||||||||||    
T  12900241 agatggaaatcatgagattcatattccaactatagaagagtgcttagtttcacttcttaggattgcacttttatgttctttggaatcaccaaaagaaaga 12900340  T
Q  108 atgaatattgtggatgtcactagagagcttaccacaatccagaaggtctttctagatggtgagatgaactgatattcttataagtttat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  12900341 atgaatattgtggatgtcactagagagcttaccacaatccagaaggtctttctagctggtgagatgaactgatattcttatatgtttat 12900429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 12932947 - 12933185
Alignment:
Q  8 agatggacatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaaga 107  Q
    ||||||| |||||||||||| | |||||||| |||| || ||||| ||||| ||| ||||||||| |||||| ||||| |||||||||||||||||||||    
T  12932947 agatggaaatcatgagattcatattccaactatagaagattgctttgtttcacttcttaggattgcacttttatgttctttggaatcaccaaaagaaaga 12933046  T
Q  108 atgaatattgtggatgtcactagagagcttaccacaatccagaaggtctttctagatggtgagatgaactgatattcttataagtttatttcgatcataa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||  ||||||   |||||||    
T  12933047 atgaatattgtggatgtcactagagagcttaccacaatccagaaggtctttttagctggtgagatgaactgatattcctatatctttattagaatcataa 12933146  T
Q  208 ccaacgcattaattgcttatggaattagaattttatttt 246  Q
    | |   ||||||||||||| ||||||||| |||||||||    
T  12933147 ctacgtcattaattgcttaaggaattagagttttatttt 12933185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 18555914 - 18555990
Alignment:
Q  170 gatgaactgatattcttataagtttatttcgatcataaccaacgcattaattgcttatggaattagaattttatttt 246  Q
    |||||||||||||||||||||||||||||  |||||||| ||| |||||||||||||||||||||||||||||||||    
T  18555914 gatgaactgatattcttataagtttatttgaatcataactaactcattaattgcttatggaattagaattttatttt 18555990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 10612411 - 10612621
Alignment:
Q  20 tgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtg 119  Q
    ||||| |||| |||||| | || |||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||    
T  10612411 tgagaatcttattccaagtttaaaggagtgcttagtttcactttttaggattggacttctttgttcaatggaatcacccaaagaaagaatgaatattgtg 10612510  T
Q  120 gatgtcactagagagcttaccacaatccagaaggtctttctagatggtgagatgaactgatattcttataagtttatttcgatcataaccaacgcattaa 219  Q
    ||||| |||||||| |||| ||||||||| || | ||||||   ||||||||| | |||| ||| |||||  |||||||  |||||||| ||| || |||    
T  10612511 gatgttactagagaacttaacacaatccataaagcctttctcactggtgagataacctgacatttttatatatttatttgaatcataactaactcaataa 10612610  T
Q  220 ttgcttatgga 230  Q
    ||| |||||||    
T  10612611 ttgtttatgga 10612621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 10746541 - 10746321
Alignment:
Q  19 atgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgt 118  Q
    |||||| |||| ||||||||||| | ||||| |||||||| |||||||||||||||||| ||||| || | ||||||||||||||||||||||||| |||    
T  10746541 atgagaatcttattccaactgtaaaagagtgtttagtttcactttttaggattggacttatttgtacaattgaatcaccaaaagaaagaatgaatactgt 10746442  T
Q  119 ggatgtcactagagagcttaccacaatccagaaggtctttctagatggtgagatgaactgatattcttataagtttatttcgatcataaccaacgcatta 218  Q
    |||||||||||||||||| | || ||||   |||| |||||| | ||||||||| |||  | ||| ||||| | ||||||  |||||||| ||| |||||    
T  10746441 ggatgtcactagagagctcaacataatcagaaaggcctttcttgctggtgagataaacataaatt-ttatatgcttatttgaatcataactaactcatta 10746343  T
Q  219 attgcttatggaattagaattt 240  Q
    |||||||||| ||||| |||||    
T  10746342 attgcttatgcaattataattt 10746321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 240
Target Start/End: Original strand, 10605459 - 10605672
Alignment:
Q  26 tcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtc 125  Q
    |||| ||||||  |||||||| | ||||||||| |||||||| ||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||     
T  10605459 tcttattccaagggtagaggaatccttagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgtt 10605558  T
Q  126 actagagagcttaccacaatccagaaggtctttctagatggtgagatgaactgatattcttataagtttatttcgatcataaccaacgcattaattgctt 225  Q
    |||| |||||||| |||||||| ||||| |||||| | ||||||||| |||| || ||  |||| | ||||||  ||||| || ||  | ||||||||||    
T  10605559 actaaagagcttaacacaatccggaaggcctttctcgctggtgagataaactcatttttctatatgcttatttgaatcat-acaaagtcgttaattgctt 10605657  T
Q  226 atggaattagaattt 240  Q
    ||||||||| |||||    
T  10605658 atggaattaaaattt 10605672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 10565692 - 10565872
Alignment:
Q  8 agatggacatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaaga 107  Q
    ||||||| ||||||||| |||| ||||| ||| | |||||||||||||||| |||||||||||||||||| | |||||| |||| |||||||||||||||    
T  10565692 agatggaaatcatgagaatcttattccacctgcaaaggagtgcttagtttcactttttaggattggacttatgtgttcaatggagtcaccaaaagaaaga 10565791  T
Q  108 atgaatattgtggatgtcactagagagcttaccacaatccagaaggtctttctagatggtgagatgaactgatattcttat 188  Q
    || || |||| || |||   |||||||||||  | ||||   |||| |||||| | ||||||||| |||||||||| ||||    
T  10565792 atcaacattgaggttgtatgtagagagcttagtataatcagaaaggcctttcttgctggtgagataaactgatatttttat 10565872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 7193719 - 7193813
Alignment:
Q  32 tccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtca 126  Q
    ||||| ||||||| ||||| ||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  7193719 tccaaatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtca 7193813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 10739915 - 10739777
Alignment:
Q  39 gtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 138  Q
    |||||||| | ||||||||| |||||||| ||||||||| |||||||| |||||||||| |||||||||||||||||| ||||||| | |  ||||||||    
T  10739915 gtagaggaatccttagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttaatcaagagctta 10739816  T
Q  139 ccacaatccagaaggtctttctagatggtgagatgaact 177  Q
     ||||||||  |||| |||||| | ||||||||| ||||    
T  10739815 acacaatccgaaaggcctttcttgctggtgagataaact 10739777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 10581684 - 10581800
Alignment:
Q  8 agatggacatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaaga 107  Q
    ||||||| ||| ||||| |||| ||||| ||| | |||||||||||||||| |||||||||||||||||| | |||||| |||| |||||||||||||||    
T  10581684 agatggaaatcttgagaatcttattccagctgcaaaggagtgcttagtttcactttttaggattggacttatgtgttcaatggagtcaccaaaagaaaga 10581783  T
Q  108 atgaatattgtggatgt 124  Q
     ||||||||| ||||||    
T  10581784 ctgaatattgaggatgt 10581800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 10762330 - 10762222
Alignment:
Q  39 gtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 138  Q
    |||||||| | ||||||||| |||||||| ||||||||| |||||||| |||||||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  10762330 gtagaggaatccttagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttactcaagagctta 10762231  T
Q  139 ccacaatcc 147  Q
     ||||||||    
T  10762230 acacaatcc 10762222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 10716469 - 10716381
Alignment:
Q  48 tgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagct 136  Q
    ||||||||||| ||||| |||||||||||| ||||| || |||||||||| | |||||||||||||||| |||||||||||||||||||    
T  10716469 tgcttagtttctcttttcaggattggacttgtttgtacaatggaatcaccgatagaaagaatgaatattatggatgtcactagagagct 10716381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 10659575 - 10659480
Alignment:
Q  39 gtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactagagag 134  Q
    |||||| ||||||||||||| |||||| |||||||||||   |||||| || ||||||||||||||||||||||||| || |||||||| ||||||    
T  10659575 gtagagaagtgcttagtttcactttttcggattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagttgatgtcaccagagag 10659480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 10651699 - 10651619
Alignment:
Q  32 tccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaa 112  Q
    ||||||||||||| |||| |||||||| ||||| ||||||||||||  ||||||| || ||||||||||||||||||||||    
T  10651699 tccaactgtagagaagtgtttagtttcacttttcaggattggacttgcttgttcagtgaaatcaccaaaagaaagaatgaa 10651619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 10587998 - 10587895
Alignment:
Q  8 agatggacatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaaga 107  Q
    |||||||||| |||||| |||| ||||| ||   ||| ||||||||||||| ||| | ||||||||||||  ||||||| ||||||||||||||||||||    
T  10587998 agatggacataatgagaatcttattccagctaaggagaagtgcttagtttcacttctaaggattggacttgcttgttcaatggaatcaccaaaagaaaga 10587899  T
Q  108 atga 111  Q
    ||||    
T  10587898 atga 10587895  T

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Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 10551520 - 10551606
Alignment:
Q  38 tgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgt 124  Q
    ||||||| | || ||| |||| ||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||| || |||||    
T  10551520 tgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 10551606  T

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Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 9827468 - 9827352
Alignment:
Q  20 tgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtg 119  Q
    ||||| |||| ||||| ||||| || | |||||||||||  |||| ||||||||||||   ||||||   ||||||||||||||||||||||| || ||     
T  9827468 tgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggacttgcctgttcaagagaatcaccaaaagaaagaatgaacatagta 9827369  T
Q  120 gatgtcactagagagct 136  Q
    ||||| |||||||||||    
T  9827368 gatgttactagagagct 9827352  T

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Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 9835837 - 9835721
Alignment:
Q  20 tgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtg 119  Q
    ||||| |||| ||||| ||||| || | |||||||||||  |||| ||||||||||||   ||||||   ||||||||||||||||||||||| || ||     
T  9835837 tgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggacttgcctgttcaagagaatcaccaaaagaaagaatgaacatagta 9835738  T
Q  120 gatgtcactagagagct 136  Q
    ||||| |||||||||||    
T  9835737 gatgttactagagagct 9835721  T

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Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 19605347 - 19605259
Alignment:
Q  48 tgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagct 136  Q
    ||||| |||||| |||||||||||||||||   |||||  ||||||| || ||||||||||||||||| |  |||| ||||||||||||    
T  19605347 tgctttgtttccatttttaggattggacttgcctgttcgatggaatctcccaaagaaagaatgaatatagaagatgccactagagagct 19605259  T

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Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 10559629 - 10559712
Alignment:
Q  50 cttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactagaga 133  Q
    ||||||||| || |||||||||||||||   |||||  ||||||| |||| | |||||||||||||  ||||||||||||||||    
T  10559629 cttagtttcactctttaggattggacttgcatgttcggtggaatcgccaacacaaagaatgaatatattggatgtcactagaga 10559712  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 31466648 - 31466548
Alignment:
Q  38 tgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctt 137  Q
    ||||||| | || ||| |||| |||||||| |||| ||||  ||||||| ||||||||||||||||||| |||| ||| || || |||| ||||||||||    
T  31466648 tgtagagaaatgtttaatttcactttttagtattgcacttggttgttcaatggaatcaccaaaagaaaggatgagtatggttgaagtcattagagagctt 31466549  T
Q  138 a 138  Q
    |    
T  31466548 a 31466548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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