View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_339 (Length: 246)
Name: NF7850A_low_339
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_339 |
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| [»] scaffold0442 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0320 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: scaffold0442 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 12319 - 12549
Alignment:
| Q |
16 |
gacatcacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactag |
115 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
12319 |
gacaccacactctcaatgtccacaaaagaaagagatatatattaaattaaaaggatggaatgaatctctttacatgttggcttactgatggatgtactgg |
12418 |
T |
|
| Q |
116 |
gttgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12419 |
gttgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggctgagtgtcaagtgtggcatgctttattacat |
12518 |
T |
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| Q |
216 |
tcttcggtggcgacatgcatgtggaattcct |
246 |
Q |
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|||||||||||| |||||||||||||||||| |
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| T |
12519 |
tcttcggtggcggcatgcatgtggaattcct |
12549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 8212437 - 8212207
Alignment:
| Q |
16 |
gacatcacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactag |
115 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | | |
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| T |
8212437 |
gacaccacactctcaatgtccataaaagaaagagaaatatattaaatttaaaggatggaatgaatctctttccatgttggcttactgatggatgtattgg |
8212338 |
T |
|
| Q |
116 |
gttgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacat |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8212337 |
gttgtgtgcagctttcctttcgatgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacat |
8212238 |
T |
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| Q |
216 |
tcttcggtggcgacatgcatgtggaattcct |
246 |
Q |
| |
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|||||||||||| |||||||||||||||||| |
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| T |
8212237 |
tcttcggtggcggcatgcatgtggaattcct |
8212207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 9290698 - 9290468
Alignment:
| Q |
16 |
gacatcacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactag |
115 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| | |
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| T |
9290698 |
gacaccacactctcaatgtccacaaaagaaagagaaatatattaatttaaaaggatggaatgaatctctttccatgttggcttactaatggatgtactgg |
9290599 |
T |
|
| Q |
116 |
gttgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacat |
215 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9290598 |
gttgtgtgcagctttcctttcaacgttttatagtgtagactcgtcaatggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgccttattacat |
9290499 |
T |
|
| Q |
216 |
tcttcggtggcgacatgcatgtggaattcct |
246 |
Q |
| |
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|||||||||||| ||||||||||| |||||| |
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| T |
9290498 |
tcttcggtggcggcatgcatgtggtattcct |
9290468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 13660 - 13431
Alignment:
| Q |
16 |
gacatcacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactag |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |
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| T |
13660 |
gacaccacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatg-aatgaatctctttccatgttggcttactgatggatgtactgg |
13562 |
T |
|
| Q |
116 |
gttgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacat |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |
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| T |
13561 |
gttgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggtggcggagtgtcaagtgtggcatgctttattacgt |
13462 |
T |
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| Q |
216 |
tcttcggtggcgacatgcatgtggaattcct |
246 |
Q |
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|||||||||||| |||||||||||||||||| |
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| T |
13461 |
tcttcggtggcggcatgcatgtggaattcct |
13431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 7054476 - 7054706
Alignment:
| Q |
16 |
gacatcacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactag |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |
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| T |
7054476 |
gacaccacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctcttttcatgttggcttactgatggatgtgatgg |
7054575 |
T |
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| Q |
116 |
gttgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7054576 |
gttgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggcggagtgtcaagtgtggcatgctttattacat |
7054675 |
T |
|
| Q |
216 |
tcttcggtggcgacatgcatgtggaattcct |
246 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |
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|
| T |
7054676 |
tcttcggtggcggcatgcatgttgaattcct |
7054706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 14462442 - 14462529
Alignment:
| Q |
159 |
tcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattcttcggtggcgacatgcatgtggaattcct |
246 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
14462442 |
tcataggtgtaaggtaccctggcggcggagtgtcaggtgtggcatgcttgattacattcttcggtggcggcatgcatgtggaattcct |
14462529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 38981004 - 38980774
Alignment:
| Q |
16 |
gacatcacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactag |
115 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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|
| T |
38981004 |
gacaccacactctcaatgtcaacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttccacgttggcttactgatggatgtactgg |
38980905 |
T |
|
| Q |
116 |
gttgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacat |
215 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38980904 |
gttgtgtgcagttttcctttcgacattttatagcgtagactcgtcataggtgtaaggtaccctggcggcggagtgtcaagtgtggcatgctttattacat |
38980805 |
T |
|
| Q |
216 |
tcttcggtggcgacatgcatgtggaattcct |
246 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
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|
| T |
38980804 |
tcttcggtggcggcatgcatgtggaattcct |
38980774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 51424890 - 51424660
Alignment:
| Q |
16 |
gacatcacactctcaatgtccacaaaagaaagagaaatatattaaattaaaa-ggatggaatgaatctcttt-cattgttggcttactgatggatgtact |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
51424890 |
gacaccacactctcaatgtccacaaaagaaatagaaatat--taaattaaaaaggatggaatgaatctcttttccatgttggcttactgatggatgtact |
51424793 |
T |
|
| Q |
114 |
aggttgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51424792 |
gggttgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtgacatgctttattac |
51424693 |
T |
|
| Q |
214 |
attcttcggtggcgacatgcatgtggaattcct |
246 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |
|
|
| T |
51424692 |
attcttcggttgcggcatgcatgtggaattcct |
51424660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 11686712 - 11686629
Alignment:
| Q |
163 |
aggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattcttcggtggcgacatgcatgtggaattcct |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |
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|
| T |
11686712 |
aggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattctttggtggcggcatgcatgtggagttcct |
11686629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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