View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_344 (Length: 246)
Name: NF7850A_low_344
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_344 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4324274 - 4324043
Alignment:
| Q |
1 |
acagagcacttcccaactccatagatctcttcctttcttttccttactgtttcgaaaccacaaatcattcacccatgtcttacccaacaagttcctcttc |
100 |
Q |
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| T |
4324274 |
acagagcacttcccaactccatagatctcttcctttcttttccttagtgtttcgaaaccacaaatcattcatccatgtcttacccaacaagttcctcttc |
4324175 |
T |
|
| Q |
101 |
atatgatttacagagaagaaggacactgcttcttgatctgaacctcactccatttgagaacgatttggctctatcaaaaaagtatgacgtgtttttgagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4324174 |
atatgatttacagagaagaaggacactgcttcttgatctgaacctcactccatttgagaacgatttggctctaacaaaaaagtatgacgtgtttttgagt |
4324075 |
T |
|
| Q |
201 |
ttccgaggagaagacactcgcgcatcattcat |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
4324074 |
ttccgaggagaagacactcgcgcatcattcat |
4324043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 4332488 - 4332540
Alignment:
| Q |
179 |
aaagtatgacgtgtttttgagtttccgaggagaagacactcgcgcatcattca |
231 |
Q |
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|||||| || ||||| |||||||| |||| |||||||||||||||||||||| |
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| T |
4332488 |
aaagtacgatgtgttcttgagttttagaggcgaagacactcgcgcatcattca |
4332540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 4356591 - 4356643
Alignment:
| Q |
179 |
aaagtatgacgtgtttttgagtttccgaggagaagacactcgcgcatcattca |
231 |
Q |
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| T |
4356591 |
aaagtacgatgtgtttttgagttttagaggagaagacactagagcatcattca |
4356643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 25951861 - 25951828
Alignment:
| Q |
189 |
gtgtttttgagtttccgaggagaagacactcgcg |
222 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
25951861 |
gtgtttttgagtttccgaggagaagatactcgcg |
25951828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 25961112 - 25961079
Alignment:
| Q |
189 |
gtgtttttgagtttccgaggagaagacactcgcg |
222 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
25961112 |
gtgtttttgagtttccgaggagaagatactcgcg |
25961079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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