View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_348 (Length: 245)

Name: NF7850A_low_348
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_348
NF7850A_low_348
[»] chr3 (2 HSPs)
chr3 (131-230)||(51941424-51941523)
chr3 (1-96)||(51941551-51941644)
[»] chr7 (1 HSPs)
chr7 (13-93)||(44569364-44569445)
[»] chr8 (1 HSPs)
chr8 (1-49)||(8004819-8004867)
[»] chr1 (1 HSPs)
chr1 (10-49)||(5197613-5197652)
[»] chr6 (1 HSPs)
chr6 (14-49)||(1176632-1176667)
[»] chr2 (1 HSPs)
chr2 (16-71)||(15027827-15027884)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 51941523 - 51941424
Alignment:
Q  131 gtttcaatctcattctcagttctatcccatcctccctttctcttttctaagtctgtttcattccctctcttgctgccttctctatacgtctcttctgatg 230  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51941523 gtttcaatctcattcccaattctatcccatcctccctttctcttttctaagtctgtttcattccctctcttgctgccttctctatacgtctcttccgatg 51941424  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 51941644 - 51941551
Alignment:
Q  1 taaaagaaaaaagagtgatgataggtaaacacacataggtggcataccatcttatacgcactcaaaaataatattaaatattcatacaaagtgcca 96  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||    
T  51941644 taaaagaaaaaagagtgatgataggtaaacacacacaggtggcataccatcttata--cacacaaaaataatattaaatattcatacaaagtgcca 51941551  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 44569364 - 44569445
Alignment:
Q  13 gagtgatgataggtaaacacacataggtggcataccatcttatacgcact-caaaaataatattaaatattcatacaaagtg 93  Q
    ||||||||||||||| ||| ||||||||||||||  | ||||||| |||| |||||||||||||||||| ||||||||||||    
T  44569364 gagtgatgataggtatacatacataggtggcatattaccttatacacacttcaaaaataatattaaatactcatacaaagtg 44569445  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8004867 - 8004819
Alignment:
Q  1 taaaagaaaaaagagtgatgataggtaaacacacataggtggcatacca 49  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  8004867 taaaaaaaaaaagagtgatgataggtaaacacccataggtggcatacca 8004819  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 5197652 - 5197613
Alignment:
Q  10 aaagagtgatgataggtaaacacacataggtggcatacca 49  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  5197652 aaagagtgatgataggtaaacactcataggtggcatacca 5197613  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 1176667 - 1176632
Alignment:
Q  14 agtgatgataggtaaacacacataggtggcatacca 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  1176667 agtgatgataggtaaacacccataggtggcatacca 1176632  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 15027827 - 15027884
Alignment:
Q  16 tgatgataggtaaacacacataggtggcataccatcttat--acgcactcaaaaataa 71  Q
    ||||||||| ||||||||||||||||||||| || |||||  || |||||||||||||    
T  15027827 tgatgatagataaacacacataggtggcatatcaccttatacacacactcaaaaataa 15027884  T

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