View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_350 (Length: 245)
Name: NF7850A_low_350
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_350 |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 40093978 - 40093770
Alignment:
| Q |
37 |
ctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcct |
136 |
Q |
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| T |
40093978 |
ctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcct |
40093879 |
T |
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| Q |
137 |
ctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttccca |
236 |
Q |
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| T |
40093878 |
ctgtagttgcatgagtctgtgcaatcgacatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttccca |
40093779 |
T |
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| Q |
237 |
tccccgtga |
245 |
Q |
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|||| |||| |
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| T |
40093778 |
tccctgtga |
40093770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 38 - 245
Target Start/End: Complemental strand, 40063346 - 40063139
Alignment:
| Q |
38 |
tcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctc |
137 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063346 |
tcatgtttaaactctttttcattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctc |
40063247 |
T |
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| Q |
138 |
tgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccat |
237 |
Q |
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| T |
40063246 |
tgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccat |
40063147 |
T |
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| Q |
238 |
ccccgtga |
245 |
Q |
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| T |
40063146 |
ccccgtga |
40063139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 41 - 245
Target Start/End: Complemental strand, 40081694 - 40081490
Alignment:
| Q |
41 |
tgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgt |
140 |
Q |
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| T |
40081694 |
tgtttaaacttttttttattgaaaatttgcaacacttacaatgtctgtgacggttttccacagttcttgcgacatttagatgaagtataaggtcctctat |
40081595 |
T |
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| Q |
141 |
agttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccc |
240 |
Q |
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| T |
40081594 |
agttgcatgagtctgtgcaaccggcatttgaagcgacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatccc |
40081495 |
T |
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| Q |
241 |
cgtga |
245 |
Q |
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||||| |
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| T |
40081494 |
cgtga |
40081490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 22012538 - 22012707
Alignment:
| Q |
76 |
ttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagca |
175 |
Q |
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||||||||||||||||||||||||||||||| || | ||||||| | || | | | |||||| || ||||||||||| || || | | ||| | || |
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| T |
22012538 |
ttacaatgtctgtgatggttttccacaattcttgaggcatttggatgcagaatatgttcctctataattgcatgagtcagtacagccagaattcggagag |
22012637 |
T |
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| Q |
176 |
acatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtga |
245 |
Q |
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| T |
22012638 |
atgtatgttggccagtatcgcccaatgctctgtccgttcacccaagcttcgccttttcccatccccgtga |
22012707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 44356174 - 44356214
Alignment:
| Q |
197 |
ccaatgctttgtccatttacccaagcctcgccttttcccat |
237 |
Q |
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| T |
44356174 |
ccaatgctttgtccatttacccaagcttcaccttttgccat |
44356214 |
T |
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