View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_355 (Length: 244)

Name: NF7850A_low_355
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_355
NF7850A_low_355
[»] chr3 (12 HSPs)
chr3 (15-236)||(3303147-3303368)
chr3 (15-237)||(3321434-3321656)
chr3 (15-237)||(3309835-3310057)
chr3 (61-237)||(3201646-3201822)
chr3 (22-237)||(3356575-3356790)
chr3 (22-212)||(3220680-3220870)
chr3 (120-237)||(3722247-3722364)
chr3 (66-224)||(3197621-3197779)
chr3 (66-195)||(2808023-2808152)
chr3 (66-210)||(2837853-2837997)
chr3 (67-209)||(2769811-2769953)
chr3 (66-195)||(2855063-2855192)
[»] scaffold0691 (1 HSPs)
scaffold0691 (66-195)||(5405-5534)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 3303147 - 3303368
Alignment:
Q  15 tcaggttctcttcagcatcttcctccattggccttgtcacctctttcctatcaaacccttctgccatccattgccgagtaagtctcttccgattgatgga 114  Q
    |||||| |||||||||| ||||||||| | |  ||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3303147 tcaggtactcttcagcaacttcctccaatagttttgtcccctccttcttaacaaacccttctgccatccattgccgagtaagtctcttccgtttgatgga 3303246  T
Q  115 gtaggcctcaggatatataccaaaatagagcatgcatgatttcaaatggtaaggcaaatcatcataactaagagataaaatgcttattagactagtcaag 214  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  3303247 gtagtcctcaggatatataccaaaatatagcatgcatgatttcaaatggtaaggcaaatcatcataactaagagataaaattcttatcagactagtcaag 3303346  T
Q  215 tgcacattgcgctctaactcca 236  Q
    ||||||||||||||||||||||    
T  3303347 tgcacattgcgctctaactcca 3303368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 3321434 - 3321656
Alignment:
Q  15 tcaggttctcttcagcatcttcctccattggccttgtcacctctttcctatcaaacccttctgccatccattgccgagtaagtctcttccgattgatgga 114  Q
    |||||| |||||| ||| ||||||||| ||| ||| || |||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3321434 tcaggtactcttctgcaacttcctccaatggtcttatctcctcattcttaacaaacccttctgccatccattgccgagtaagtctcttccgattgatgga 3321533  T
Q  115 gtaggcctcaggatatataccaaaatagagcatgcatgatttcaaatggtaaggcaaatcatcataactaagagataaaatgcttattagactagtcaag 214  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||| |||||    
T  3321534 gtagtcctcaggatatataccaaaatatagcatgcatgatttcaaatggtaaggcaaatcatcataactaagagataaaatctttgttagactattcaag 3321633  T
Q  215 tgcacattgcgctctaactccat 237  Q
    ||||||||| |||||||||||||    
T  3321634 tgcacattgtgctctaactccat 3321656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 3309835 - 3310057
Alignment:
Q  15 tcaggttctcttcagcatcttcctccattggccttgtcacctctttcctatcaaacccttctgccatccattgccgagtaagtctcttccgattgatgga 114  Q
    |||||| |||||||||| ||||||||| ||   | ||| |||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||     
T  3309835 tcaggtactcttcagcaacttcctccaatgatttagtctcctcattcataacaaacccttcagccatccattgccgagtaagtctcttccgattgatggt 3309934  T
Q  115 gtaggcctcaggatatataccaaaatagagcatgcatgatttcaaatggtaaggcaaatcatcataactaagagataaaatgcttattagactagtcaag 214  Q
    |||| |||||||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||||||||||||||||||  || |||||||||||||     
T  3309935 gtagtcctcaggatatataccaaaatacagcatgcaagatttcaagtggtgaggcaaatcatcataactaagagataaaatctttgttagactagtcaaa 3310034  T
Q  215 tgcacattgcgctctaactccat 237  Q
    ||||| ||| |||||||||||||    
T  3310035 tgcacgttgtgctctaactccat 3310057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 3201822 - 3201646
Alignment:
Q  61 cctatcaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtaggcctcaggatatataccaaaatagagcatgcatgatttcaaa 160  Q
    |||| |||||||||| |||||||||||||||||||||||||||  | |||||| |||| |||| ||||||||||||||||| ||||||||||||||||||    
T  3201822 cctaacaaacccttcagccatccattgccgagtaagtctcttcgtagtgatggtgtagtcctcgggatatataccaaaatacagcatgcatgatttcaaa 3201723  T
Q  161 tggtaaggcaaatcatcataactaagagataaaatgcttattagactagtcaagtgcacattgcgctctaactccat 237  Q
    |||  |||||||||||| ||||| |||||||||||  |||||||||| ||||| |||||||||||||||||||||||    
T  3201722 tggctaggcaaatcatcgtaacttagagataaaatctttattagacttgtcaaatgcacattgcgctctaactccat 3201646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 3356575 - 3356790
Alignment:
Q  22 ctcttcagcatcttcctccattggccttgtcacctctttcctatcaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtaggcc 121  Q
    |||||||||| ||||||| | ||| |||||   ||| ||| || |||||||||| ||||||||||||| ||||||||| || || || |||  |||| ||    
T  3356575 ctcttcagcaacttcctcgaatggtcttgtgtgctcattcttaacaaacccttcagccatccattgcctagtaagtctttttcgtttaatgatgtagtcc 3356674  T
Q  122 tcaggatatataccaaaatagagcatgcatgatttcaaatggtaaggcaaatcatcataactaagagataaaatgcttattagactagtcaagtgcacat 221  Q
    || ||||| || ||||| || | |||||| ||||||| ||||||||||||||||||||||||||||  |||||| ||||||| |||||||||||||||||    
T  3356675 tctggatacatgccaaagtataacatgcaggatttcagatggtaaggcaaatcatcataactaagacttaaaatccttattatactagtcaagtgcacat 3356774  T
Q  222 tgcgctctaactccat 237  Q
    ||||||||||||||||    
T  3356775 tgcgctctaactccat 3356790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 3220680 - 3220870
Alignment:
Q  22 ctcttcagcatcttcctccattggccttgtcacctctttcctatcaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtaggcc 121  Q
    |||||| ||| ||||||||| ||| |||||   ||| ||| || |||||||||| ||||||||||||||||||| ||| ||||| ||||||  |||| ||    
T  3220680 ctcttccgcaacttcctccaatggtcttgtgtgctcattcttaacaaacccttcagccatccattgccgagtaattcttttccgtttgatgacgtagtcc 3220779  T
Q  122 tcaggatatataccaaaatagagcatgcatgatttcaaatggtaaggcaaatcatcataactaagagataaaatgcttattagactagtca 212  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| ||||| || || ||||||| |||||    
T  3220780 tcaggatatataccaaaatataacatacatgatttcaaatggtaaggcaaatcatcataactaagggataatatcctcattagaccagtca 3220870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 3722364 - 3722247
Alignment:
Q  120 cctcaggatatataccaaaatagagcatgcatgatttcaaatggtaaggcaaatcatcataactaagagataaaatgcttattagactagtcaagtgcac 219  Q
    |||||||||| || ||||| || | |||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||    
T  3722364 cctcaggatacatgccaaagtataacatgcatgatttcagatggtaaggcaaatcatcataactaagacataaaatccttattatactagtcaaatgcac 3722265  T
Q  220 attgcgctctaactccat 237  Q
    ||||||||||||||||||    
T  3722264 attgcgctctaactccat 3722247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 224
Target Start/End: Original strand, 3197621 - 3197779
Alignment:
Q  66 caaacccttctgccatccattgccgagtaagtctcttccgattgatggagtaggcctcaggatatataccaaaatagagcatgcatgatttcaaatggta 165  Q
    |||| ||||| || |||||||||| |||||||||||| | |||||||| || |  ||| ||||| ||||||||||| | |||||||  ||| |||||  |    
T  3197621 caaatccttcggctatccattgcctagtaagtctcttacaattgatggtgtggttctccggatagataccaaaatacaacatgcatagttttaaatgaca 3197720  T
Q  166 aggcaaatcatcataactaagagataaaatgcttattagactagtcaagtgcacattgc 224  Q
    ||| | ||| ||||||||  ||||||||||  || |||||| ||| || ||||||||||    
T  3197721 aggaagatcctcataactccgagataaaatcattgttagacgagtgaaatgcacattgc 3197779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 2808152 - 2808023
Alignment:
Q  66 caaacccttctgccatccattgccgagtaagtctcttccgattgatggagtaggcctcaggatatataccaaaatagagcatgcatgatttcaaatggta 165  Q
    |||||||||| || |||||||| ||||| | ||||||  |||| || |||||| |||| ||||||||||||||||| |  ||||| | |||||| | |||    
T  2808152 caaacccttcagctatccattgtcgagttaatctcttatgattaatagagtagtcctctggatatataccaaaatacaaaatgcagggtttcaagtagta 2808053  T
Q  166 aggcaaatcatcataactaagagataaaat 195  Q
     |||||  |||| ||||| || ||||||||    
T  2808052 gggcaagccatcgtaactcagtgataaaat 2808023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 210
Target Start/End: Original strand, 2837853 - 2837997
Alignment:
Q  66 caaacccttctgccatccattgccgagtaagtctcttccgattgatggagtaggcctcaggatatataccaaaatagagcatgcatgatttcaaatggta 165  Q
    ||||||| || || |||||||||| ||| |||||| |  |||| ||||||||  |||| ||||||||||||||||| |  ||||||| ||| |||| |||    
T  2837853 caaacccctcagctatccattgcctagttagtctcctatgattaatggagtaatcctctggatatataccaaaatacaaaatgcatggttttaaatagta 2837952  T
Q  166 aggcaaatcatcataactaagagataaaatgcttattagactagt 210  Q
     ||||     |||||||| |||||||||||  || ||||||||||    
T  2837953 cggcaggctgtcataactgagagataaaatctttgttagactagt 2837997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 2769953 - 2769811
Alignment:
Q  67 aaacccttctgccatccattgccgagtaagtctcttccgattgatggagtaggcctcaggatatataccaaaatagagcatgcatgatttcaaatggtaa 166  Q
    ||||||||| || ||||||||||| || | ||||||   ||| || || ||| | | |||||||||||||||||| |  ||||||| |||||| | ||||    
T  2769953 aaacccttcagctatccattgccgtgttaatctcttattattaatagaatagtcttgaggatatataccaaaatacaaaatgcatggtttcaagtagtaa 2769854  T
Q  167 ggcaaatcatcataactaagagataaaatgcttattagactag 209  Q
    || |   |||||||||||||||| |||||  || |||||||||    
T  2769853 ggaaggccatcataactaagagacaaaatctttgttagactag 2769811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 2855063 - 2855192
Alignment:
Q  66 caaacccttctgccatccattgccgagtaagtctcttccgattgatggagtaggcctcaggatatataccaaaatagagcatgcatgatttcaaatggta 165  Q
    ||||||| || || |||||||||| ||| |||||| |  |||| ||||||||  |||| ||||||||||||||||| |  ||||||| ||| |||| |||    
T  2855063 caaacccctcagctatccattgcctagttagtctcctatgattaatggagtaatcctctggatatataccaaaatacaaaatgcatggttttaaatagta 2855162  T
Q  166 aggcaaatcatcataactaagagataaaat 195  Q
     ||||     |||||||| |||||||||||    
T  2855163 cggcaggctgtcataactgagagataaaat 2855192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 5405 - 5534
Alignment:
Q  66 caaacccttctgccatccattgccgagtaagtctcttccgattgatggagtaggcctcaggatatataccaaaatagagcatgcatgatttcaaatggta 165  Q
    |||||||||| || |||||||| ||||| | ||||||  |||| || || ||| |||| ||||||||||||||||| |  ||||||| |||||| | |||    
T  5405 caaacccttcagctatccattgacgagttaatctcttatgattaatagaatagtcctctggatatataccaaaatacaaaatgcatggtttcaagtagta 5504  T
Q  166 aggcaaatcatcataactaagagataaaat 195  Q
    |||||   ||||||||||||| || |||||    
T  5505 aggcaggccatcataactaagtgacaaaat 5534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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