View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_356 (Length: 243)
Name: NF7850A_low_356
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_356 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 40179621 - 40179825
Alignment:
| Q |
20 |
tatggttaacagtgcattcaaagcaccaaatgctaagaaatccaacattgtaggggggctcaaagtgacacctcctccaccaatcacactgcctggttct |
119 |
Q |
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| T |
40179621 |
tatggttaacagtccattcaaagcaccaaatgctaagaaatccaacattgtaggggggctcaaagtgacacctcctccaccaatcacactgcctggttct |
40179720 |
T |
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| Q |
120 |
gcaggtaacattttttcatttcatcttaatgttcattttcagtttcgtaattatatttcaatcaatttgattgtactattgctcaaaaatgatcattgtc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40179721 |
gcaggtaacattttttcatttcatcttaatgttcattttcagtttcgtaattatatttcagtcaatttgattgtactattgctcaaaaatgatcattgtc |
40179820 |
T |
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| Q |
220 |
ttgtt |
224 |
Q |
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||||| |
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| T |
40179821 |
ttgtt |
40179825 |
T |
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