View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_357 (Length: 243)

Name: NF7850A_low_357
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_357
NF7850A_low_357
[»] chr8 (4 HSPs)
chr8 (1-224)||(9290176-9290399)
chr8 (51-224)||(8211931-8212106)
chr8 (7-94)||(41374153-41374240)
chr8 (1-35)||(8212104-8212138)
[»] chr3 (2 HSPs)
chr3 (1-188)||(51424404-51424590)
chr3 (1-187)||(11686373-11686559)
[»] chr4 (2 HSPs)
chr4 (1-172)||(7054775-7054945)
chr4 (1-172)||(14462599-14462769)
[»] chr2 (1 HSPs)
chr2 (1-168)||(38980539-38980705)
[»] scaffold0442 (1 HSPs)
scaffold0442 (43-224)||(12622-12801)
[»] scaffold0320 (1 HSPs)
scaffold0320 (1-54)||(13310-13363)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9290399 - 9290176
Alignment:
Q  1 gacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaaggaaatgaaagactaataaagaaaatann 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||      
T  9290399 gacaacaattcaggtaaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaagaaaatgaaagactactaaagaaaata-t 9290301  T
Q  101 nnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattcatgtatatacctcaattatattttctctgataa-nnnnnnncat 199  Q
         |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  9290300 tttttgtaaatatgtaccagaagatataatcaagacaatgaccctcactttgattcatgtatatacctcaattatattttctctgataattttgtttcat 9290201  T
Q  200 ttccaatttgatatggattttttct 224  Q
    |||||||||||||||||||||||||    
T  9290200 ttccaatttgatatggattttttct 9290176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 8212106 - 8211931
Alignment:
Q  51 catccattaaatgttgatgaaggaaatgaaagactaataaagaaaatannnnnnngtaaatatataccagaagatataatcaagacaatgaccctcactt 150  Q
    ||||||||||||||||||||||||||||||||||||||||      |        |||||||||||||||||||||||||||||||||||||||||||||    
T  8212106 catccattaaatgttgatgaaggaaatgaaagactaataatttttttttttttttgtaaatatataccagaagatataatcaagacaatgaccctcactt 8212007  T
Q  151 tgattcatgtatatacctcaattatattttctctgataa--nnnnnnncatttccaatttgatatggattttttct 224  Q
    ||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||| |||||||||    
T  8212006 tgattcatgtatatacctcaattttattttctctgataatttttttttcatttccaatttgatatgtattttttct 8211931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 41374240 - 41374153
Alignment:
Q  7 aattcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaaggaaatgaaagactaataaagaa 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41374240 aattcagataaatatcatctaacaaacatatattggacatcccccatctattaaatgttgatgaaggaaatgaaagactaataaagaa 41374153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8212138 - 8212104
Alignment:
Q  1 gacaacaattcagataaatatcatctaacaaacat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8212138 gacaacaattcagataaatatcatctaacaaacat 8212104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 51424590 - 51424404
Alignment:
Q  1 gacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaaggaaatgaaagactaataaagaaaatann 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||      
T  51424590 gacaacaattcagataaatatcatctaacaaacatatattggacatccctcttccattaaatgttgatgaaggaaatgaaagactaataaagaaaata-a 51424492  T
Q  101 nnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattcatgtatatacctcaattatattttctctgata 188  Q
         |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51424491 tttttgtaaatatgtaccagaaaatataatcaagacaatgaccctcgctttgattcatgtatatacctcaattatattttctctgata 51424404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 11686559 - 11686373
Alignment:
Q  1 gacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaaggaaatgaaagactaataaagaaaatann 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||      
T  11686559 gacaacaactcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgataaaggaaatgaaagactaatagtgaaaatatt 11686460  T
Q  101 nnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattcatgtatatacctcaattatattttctctgat 187  Q
         |||||||| |||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11686459 tttttgtaaatatgtaccagtagatataattaggacaatgaccctcactttgattcatgtatatacctcaattatattttctctgat 11686373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 7054775 - 7054945
Alignment:
Q  1 gacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaaggaaatgaaagactaataaagaaaatann 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      
T  7054775 gacaacaattcagataaatatcatctaacaaacatatattggacatccctcatccattaaatgttgatgaaggaaatgaaagactaataaagaaaata-t 7054873  T
Q  101 nnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattcatgtatatacctcaat 172  Q
         |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054874 tttttgtaaatatgtaccagaagatataatcaagacaatgaccctcactttgattcatgtatatacctcaat 7054945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 14462599 - 14462769
Alignment:
Q  1 gacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaaggaaatgaaagactaataaagaaaatann 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  14462599 gacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaaggaaatgaaagactaataaagaaaata-t 14462697  T
Q  101 nnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattcatgtatatacctcaat 172  Q
         |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14462698 tttttgtaaatatgtaccagaagatataatcaagacaatgaccatcactttgattcatgtatatacctcaat 14462769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 38980705 - 38980539
Alignment:
Q  1 gacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaaggaaatgaaagactaataaagaaaatann 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||      
T  38980705 gacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccatgaaatgttgatgaatgaaatgaatgactaataaagaaaata-t 38980607  T
Q  101 nnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattcatgtatatacct 168  Q
         |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38980606 tttttgtaaatatgtatcagaagatataatcaagacaatgaccctcactttgattcatgtatatacct 38980539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 12622 - 12801
Alignment:
Q  43 acatcccccatccattaaatgttgatgaaggaaatgaaagactaataaagaaaatannnnnnngtaaatatataccagaagatataatcaagacaatgac 142  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||| || ||||||||||| |||||||||||||    
T  12622 acatcccccacccattaaatgttgatgaaggaaatgaaagactaataaagaaaatatttttt-gtaaatatgtatcagaagatatattcaagacaatgac 12720  T
Q  143 cctcactttgattcatgtatatacctcaattatattttctctgataa-nnnnnnncatttccaatttgatatggattttttct 224  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||||        ||||||||||||||||||||||||||||    
T  12721 cctcactttgattcatgtatatacctcaattata--ttctctcataattttttttcatttccaatttgatatggattttttct 12801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13363 - 13310
Alignment:
Q  1 gacaacaattcagataaatatcatctaacaaacatatattggacatcccccatc 54  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13363 gacaacaattcagataaatatcatataacaaacatatattggacatcccccatc 13310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University