View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_low_362 (Length: 243)
Name: NF7850A_low_362
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_362 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 24639591 - 24639829
Alignment:
| Q |
1 |
gtagacaagaatttcagacagaggattcttactcatttatcttcacagtaagtcat-tgttattccttcactaaacttaagagttttattattttgacat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639591 |
gtagacaagaatttcagacagaggattcttactcatttatctttacagtaagtcatatgttattccttcactaaacttaagagttttattattttgacat |
24639690 |
T |
|
| Q |
100 |
gcaaatttgacaacgatttagatggttaatgaagtttaaactgatgacaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639691 |
gcaaatttgacaacgatttagatggttaatgaagtttaaactgatgtcaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcca |
24639790 |
T |
|
| Q |
200 |
caaattgtgctcattggtttggttgatttgagctttcat |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639791 |
caaattgtgctcattggtttggttgatttgagctttcat |
24639829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 52491175 - 52490937
Alignment:
| Q |
1 |
gtagacaagaatttcagacagaggattcttactcatttatcttcacagtaagtcat-tgttattccttcactaaacttaagagttttattattttgacat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52491175 |
gtagacaagaatttcagacagaggattcttactcatttatctttacagtaagtcatatgttattccttcactaaacttaagagttttattattttgacat |
52491076 |
T |
|
| Q |
100 |
gcaaatttgacaacgatttagatggttaatgaagtttaaactgatgacaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52491075 |
gcaaatttgacaacgatttagatggttaatgaagtttaaactgatgtcaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcca |
52490976 |
T |
|
| Q |
200 |
caaattgtgctcattggtttggttgatttgagctttcat |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52490975 |
caaattgtgctcattggtttggttgatttgagctttcat |
52490937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University