View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_363 (Length: 243)
Name: NF7850A_low_363
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_363 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 42788698 - 42788921
Alignment:
| Q |
20 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggctagccatgaagttacgtattcttttcaa |
119 |
Q |
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| T |
42788698 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggttagccatgaagttacgtattcttttcaa |
42788797 |
T |
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| Q |
120 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaatttc |
219 |
Q |
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| T |
42788798 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaatttc |
42788897 |
T |
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| Q |
220 |
agttcattcaaaacaatattccaa |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
42788898 |
agttcattcaaaacaatattccaa |
42788921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 42798236 - 42798459
Alignment:
| Q |
20 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggctagccatgaagttacgtattcttttcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42798236 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggttagccatgaagttacgtattcttttcaa |
42798335 |
T |
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| Q |
120 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaatttc |
219 |
Q |
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| T |
42798336 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaatttc |
42798435 |
T |
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| Q |
220 |
agttcattcaaaacaatattccaa |
243 |
Q |
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| T |
42798436 |
agttcattcaaaacaatattccaa |
42798459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 47828785 - 47828714
Alignment:
| Q |
144 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
215 |
Q |
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| T |
47828785 |
catattagcaaagcaaatcctaaaccacccaggttcagaacaatgacaagaagatccaggagatatattcaa |
47828714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 34566447 - 34566583
Alignment:
| Q |
96 |
catgaagttacgtattcttttcaatgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaa |
195 |
Q |
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|||||| | |||||||||||| | ||||| ||| | || | |||||||||||| ||||| || || ||||||||||| |||| ||||||||||||| |
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| T |
34566447 |
catgaaatcacgtattcttttgagtgcaagttcaagtgtttcttcactcatatttgcaaaacaaaccctaaaccaaccgggttcggaacaatgacaagaa |
34566546 |
T |
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| Q |
196 |
caccccggagatatattcaatttcagttcattcaaaa |
232 |
Q |
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||||| || || ||||| | || | ||||||||||| |
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| T |
34566547 |
caccctggtgaaatattaagcttaacttcattcaaaa |
34566583 |
T |
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