View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_365 (Length: 243)

Name: NF7850A_low_365
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_365
NF7850A_low_365
[»] chr8 (12 HSPs)
chr8 (29-227)||(17722420-17722608)
chr8 (41-227)||(35948827-35949013)
chr8 (41-227)||(7956340-7956516)
chr8 (41-227)||(44223327-44223503)
chr8 (41-178)||(9505015-9505153)
chr8 (94-199)||(3767684-3767789)
chr8 (41-199)||(16570890-16571047)
chr8 (41-178)||(32321799-32321936)
chr8 (49-199)||(34760834-34760975)
chr8 (142-216)||(9040513-9040587)
chr8 (41-93)||(9040427-9040479)
chr8 (90-126)||(8266063-8266099)
[»] chr1 (12 HSPs)
chr1 (41-227)||(16584864-16585050)
chr1 (95-227)||(25785805-25785937)
chr1 (49-227)||(8083994-8084173)
chr1 (65-227)||(1161433-1161594)
chr1 (96-227)||(11619973-11620104)
chr1 (43-227)||(18461120-18461295)
chr1 (41-199)||(42009997-42010155)
chr1 (49-199)||(512961-513111)
chr1 (40-133)||(32678514-32678607)
chr1 (49-131)||(8414674-8414756)
chr1 (86-224)||(11911629-11911768)
chr1 (64-131)||(27320560-27320627)
[»] chr4 (7 HSPs)
chr4 (41-220)||(23107918-23108097)
chr4 (44-227)||(4413456-4413640)
chr4 (40-227)||(24466315-24466502)
chr4 (63-227)||(28319290-28319454)
chr4 (49-178)||(53393204-53393333)
chr4 (44-178)||(8606181-8606315)
chr4 (41-130)||(39839064-39839153)
[»] chr5 (8 HSPs)
chr5 (40-217)||(16746550-16746727)
chr5 (41-213)||(31895896-31896068)
chr5 (44-227)||(19947711-19947894)
chr5 (100-227)||(16746421-16746548)
chr5 (63-178)||(1498243-1498358)
chr5 (49-192)||(29126091-29126234)
chr5 (51-89)||(41092125-41092163)
chr5 (72-132)||(30126223-30126283)
[»] scaffold0879 (1 HSPs)
scaffold0879 (40-227)||(580-767)
[»] chr7 (13 HSPs)
chr7 (41-227)||(7352370-7352555)
chr7 (40-227)||(39695086-39695268)
chr7 (102-227)||(46993309-46993434)
chr7 (94-224)||(7994998-7995128)
chr7 (96-227)||(11727328-11727449)
chr7 (41-199)||(48070614-48070772)
chr7 (41-178)||(3996991-3997128)
chr7 (73-177)||(46265353-46265457)
chr7 (73-213)||(2922986-2923125)
chr7 (49-132)||(12013026-12013109)
chr7 (41-192)||(27226938-27227089)
chr7 (49-105)||(12471855-12471911)
chr7 (53-105)||(35738239-35738291)
[»] chr3 (12 HSPs)
chr3 (41-227)||(46655514-46655701)
chr3 (44-192)||(44471020-44471168)
chr3 (40-216)||(11503337-11503513)
chr3 (40-192)||(30554574-30554726)
chr3 (49-138)||(46892612-46892701)
chr3 (77-178)||(27524053-27524154)
chr3 (96-192)||(779533-779629)
chr3 (49-137)||(23307117-23307205)
chr3 (43-106)||(12937849-12937912)
chr3 (41-199)||(26757593-26757751)
chr3 (86-172)||(44285605-44285691)
chr3 (41-141)||(23659401-23659501)
[»] chr2 (11 HSPs)
chr2 (41-220)||(31111413-31111592)
chr2 (94-227)||(4638207-4638340)
chr2 (43-220)||(13852276-13852453)
chr2 (41-199)||(29109190-29109348)
chr2 (53-225)||(3919857-3920029)
chr2 (160-227)||(36009278-36009345)
chr2 (41-160)||(12893980-12894099)
chr2 (86-172)||(37630375-37630461)
chr2 (94-216)||(38607020-38607141)
chr2 (49-178)||(5526225-5526353)
chr2 (40-127)||(30906942-30907029)
[»] scaffold0565 (1 HSPs)
scaffold0565 (101-227)||(1844-1970)
[»] chr6 (7 HSPs)
chr6 (44-177)||(7176529-7176662)
chr6 (71-178)||(23301441-23301548)
chr6 (41-131)||(11971456-11971546)
chr6 (71-199)||(23300455-23300583)
chr6 (96-198)||(7551423-7551525)
chr6 (51-172)||(9826747-9826868)
chr6 (101-178)||(23585913-23585990)
[»] scaffold0070 (1 HSPs)
scaffold0070 (41-131)||(33729-33819)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 17722608 - 17722420
Alignment:
Q  29 atcaacgagagataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcg 128  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||    
T  17722608 atcaacgagagataggggtgtaaatggttcggataaaaccaatgaaaccgaaagtccaaaccgga----------aaaatatccaaccttgtttggttcg 17722519  T
Q  129 gtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17722518 gtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaatccgatgat 17722420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 227
Target Start/End: Original strand, 35948827 - 35949013
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| |||||| |||| | |||||||| |||| ||||||||||||  |||||||| | ||||||||||| || |||||||||||||||||||||| |    
T  35948827 taggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaattgaaccaaaacaaaaaaatatccgactttgtttggttcggtttgaaaccga 35948926  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    ||||||  | || ||| ||||||||||||||||| |||||| ||||| |||||||||||  ||||||||||||||||||||||||||    
T  35948927 tccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaatccgatgat 35949013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 7956516 - 7956340
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||          ||||||| | |||||| || ||| ||||||||||| |    
T  7956516 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa----------aaaatattcgaccttgctttgtttggtttgaaaccga 7956427  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    | ||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||    
T  7956426 ttcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgat 7956340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 44223503 - 44223327
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||          |||||||   | |||||||||||| |||| ||||| |    
T  44223503 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa----------aaaatatatgatcttgtttggttcagtttaaaaccga 44223414  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    || |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  44223413 tctgaaccaatcgaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgat 44223327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 178
Target Start/End: Original strand, 9505015 - 9505153
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccg-aaaaaatatccaaccttgtttggttcggtttgaaacca 139  Q
    ||||||| ||||||||| | |||||||| |||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||| ||  ||| |     
T  9505015 taggggtgtaagtggtttggataaaaccgatgaaaccgaaaatccaaacctaaccaaaacgaaaaaaatatccaaccttgtttggttcgattcaaaatcg 9505114  T
Q  140 atccgaactaatcgaaaccgatctagtttggtttggttc 178  Q
    | |||||| || | |||||||| |||||||||| |||||    
T  9505115 aaccgaaccaaccaaaaccgatatagtttggttcggttc 9505153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 3767789 - 3767684
Alignment:
Q  94 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 193  Q
    ||||||||||||| ||||| ||||||||| ||||||||  ||||| | |||||| |||| |||||||||||||||||||||||||  | ||||||||||     
T  3767789 ccaaaccgaaaaagtatccgaccttgtttagttcggttcaaaaccgaaccgaaccaatctaaaccgatctagtttggtttggttctcggttttttatttt 3767690  T
Q  194 gagatc 199  Q
    ||||||    
T  3767689 gagatc 3767684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 16571047 - 16570890
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||| ||||| | | |||||| |||||| | ||| | |||||||||||||||| ||||||||||||||||||||||||| ||||  ||||| |    
T  16571047 taggggtgtaattggtttggacaaaaccgatgaaatcaaaaattcaaaccgaaccaaacc-aaaaaatatccaaccttgtttggtttggttcaaaaccga 16570949  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 199  Q
     || ||| || | ||||||||||| ||||||| |||||  ||||||| |||| ||||||    
T  16570948 accaaaccaacctaaaccgatctaatttggttaggttctcgatttttaattttgagatc 16570890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 178
Target Start/End: Original strand, 32321799 - 32321936
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    |||||||  |||||||||| |||||||  ||||||||||||  | ||||| || |||||||||||| ||| | ||||||||||||||||||| ||| |||    
T  32321799 taggggtgcaagtggttcggataaaactgatgaaaccgaaaacctaaaccaaatcaaaccgaaaaagtattcgaccttgtttggttcggtttaaaaacaa 32321898  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttc 178  Q
     |||||  ||   ||||||||||| ||||||| |||||    
T  32321899 accgaatcaacataaaccgatctaatttggttcggttc 32321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 34760975 - 34760834
Alignment:
Q  49 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 148  Q
    |||| |||||||| |||||| |||||||||||| ||||||||||         ||||| ||||  | ||||||||||||||||  ||| | | ||||||     
T  34760975 taagcggttcgaacaaaaccgatgaaaccgaaaatccaaaccga---------aaaaagtatctgatcttgtttggttcggttcaaaatcgaaccgaacc 34760885  T
Q  149 aatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 199  Q
    || | ||||||||||||||||||||||||| || ||||| |||| ||||||    
T  34760884 aacctaaaccgatctagtttggtttggttcttggtttttgattttgagatc 34760834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 9040513 - 9040587
Alignment:
Q  142 ccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacc 216  Q
    |||||| |||| |||||||||| ||||||||||||||  | ||||| |||| |||||||  ||||||||||||||    
T  9040513 ccgaaccaatctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 9040427 - 9040479
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaa 93  Q
    ||||||| |||| |||||| |||||||| |||||| |||||||||||||||||    
T  9040427 taggggtataagcggttcggataaaaccgatgaaatcgaaagtccaaaccgaa 9040479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 8266063 - 8266099
Alignment:
Q  90 cgaaccaaaccgaaaaaatatccaaccttgtttggtt 126  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  8266063 cgaaccaaaccgaaaaagtatccaaccttatttggtt 8266099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 16585050 - 16584864
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  16585050 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaaaatatccaaccttgtttggttcggtttgaaaccga 16584951  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||    
T  16584950 tccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaatctgatgat 16584864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 25785805 - 25785937
Alignment:
Q  95 caaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcg 194  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||    
T  25785805 caaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaaccaatcgaaaccgatatagtttggtttggttcatggtttttcatttcg 25785904  T
Q  195 agatctgtgaaaccgatgaaccaatccgatgat 227  Q
    ||||| |||||||||||||||||||||||||||    
T  25785905 agatccgtgaaaccgatgaaccaatccgatgat 25785937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 49 - 227
Target Start/End: Original strand, 8083994 - 8084173
Alignment:
Q  49 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaaccaatccgaac 147  Q
    ||||||||||| | | |||||| |||| |||||||||||||  || ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  8083994 taagtggttcggacataaccaacgaaatcgaaagtccaaactaaatcaaaccgaaaaaaatatccgaccttgtttggtttggtttgaaaccaatccgaac 8084093  T
Q  148 taatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
     ||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||| |||||| ||||||||||||    
T  8084094 caatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgat 8084173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 1161594 - 1161433
Alignment:
Q  65 aaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatcta 164  Q
    |||||| |||| | |||||  ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| | | ||||||||||||||||    
T  1161594 aaccaacgaaatcaaaagtttaaaccgaaccaaaccgaaaaa-tatccgaccttatttggttcggtttgaaaccaatccaagccaatcgaaaccgatcta 1161496  T
Q  165 gtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    ||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||    
T  1161495 gtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgat 1161433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 11619973 - 11620104
Alignment:
Q  96 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 195  Q
    ||||| ||||||||||| | |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||| ||    
T  11619973 aaaccaaaaaaatatccgatcttgtttggttcagtttgaaaccgatccaaactaatcgaaaccgatctagtttggtttggttcatggtttttcattttga 11620072  T
Q  196 gatctgtgaaaccgatgaaccaatccgatgat 227  Q
    ||||||||||||||||||||||||||||||||    
T  11620073 gatctgtgaaaccgatgaaccaatccgatgat 11620104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 18461120 - 18461295
Alignment:
Q  43 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatc 142  Q
    ||||| |||||||||| || |||||||| |||||| |||||||||||| |||||||         ||||| ||||||||| ||||||||| ||| | |||    
T  18461120 ggggtgtaagtggttcaaacaaaaccaacgaaaccaaaagtccaaaccaaaccaaa---------tatccgaccttgtttagttcggtttcaaatcgatc 18461210  T
Q  143 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
     | || |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18461211 tggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaatccgatgat 18461295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 42010155 - 42009997
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| |||| |||||| || ||||||| |||||||| ||||||||| | |||||||||||||||||||| || |||||||||||||||||||||| |    
T  42010155 taggggtgtaagcggttcggattaaaccaacgaaaccgatagtccaaactggaccaaaccgaaaaaatatccgacattgtttggttcggtttgaaaccga 42010056  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 199  Q
    ||| ||| ||| |||||||||||||||| |||||  ||||| ||||| |||| ||||||    
T  42010055 tccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcattttgagatc 42009997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 512961 - 513111
Alignment:
Q  49 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 148  Q
    ||||||||||| | |||||  |||||| | |||  ||||| ||||||||||||||||| ||||||| ||||||||||||||||  ||||||| ||||||     
T  512961 taagtggttcggacaaaactgatgaaatcaaaaacccaaatcgaaccaaaccgaaaaagtatccaatcttgtttggttcggttcaaaaccaaaccgaacc 513060  T
Q  149 aatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 199  Q
    || | |||||||||||||||| || | ||| | |||||| |||| ||||||    
T  513061 aacctaaaccgatctagtttgattcgattcttaatttttaattttgagatc 513111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 32678607 - 32678514
Alignment:
Q  40 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttg 133  Q
    |||| ||| ||||||||||||| |||||| |||||| ||||| | |||||||||| || |||||||||||||| ||||||||||||| ||||||    
T  32678607 atagaggtgtaagtggttcgaacaaaaccgatgaaatcgaaaattcaaaccgaactaagccgaaaaaatatccgaccttgtttggtttggtttg 32678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 8414756 - 8414674
Alignment:
Q  49 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 131  Q
    ||||||||||| | |||||| ||||||| |||| ||||||| |||| ||||||||||| ||||| ||||||||||||| ||||    
T  8414756 taagtggttcggacaaaaccgatgaaactgaaaatccaaactgaacaaaaccgaaaaagtatccgaccttgtttggtttggtt 8414674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 11911629 - 11911768
Alignment:
Q  86 aaaccgaaccaaaccgaaaaaa-tatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatt 184  Q
    ||||| ||||||  |||||||| ||||| ||||||||||||||||||  ||||| | |||||| || | |||||||||||||||| ||| |||| || ||    
T  11911629 aaaccaaaccaattcgaaaaaagtatccgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaaccgatctagtttgatttagttcttggtt 11911728  T
Q  185 ttttatttcgagatctgtgaaaccgatgaaccaatccgat 224  Q
    ||| |||| || ||| |   |||||||||||||| |||||    
T  11911729 tttaattttgaaatccgatgaaccgatgaaccaaaccgat 11911768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 27320627 - 27320560
Alignment:
Q  64 aaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 131  Q
    ||||| |||||||||||| || |||| ||| |||| | ||||| ||||| ||||||||||||||||||    
T  27320627 aaaccgatgaaaccgaaaatctaaactgaatcaaatcaaaaaagtatccgaccttgtttggttcggtt 27320560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 23108097 - 23107918
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||||| |    
T  23108097 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaacaggaaaaatatccgaccttgtttggtttggtttgaaaccga 23107998  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatc 220  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  23107997 tccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatc 23107918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 44 - 227
Target Start/End: Original strand, 4413456 - 4413640
Alignment:
Q  44 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaaccaatc 142  Q
    |||| ||||||||||| |||||||||| |||||| ||||| ||||| |||| | |||||||| ||||||| | ||||||||||||||||| ||||| |||    
T  4413456 gggtgtaagtggttcggataaaaccaacgaaaccaaaagttcaaactgaactagaccgaaaaaaatatccgatcttgtttggttcggtttaaaaccgatc 4413555  T
Q  143 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||    
T  4413556 cgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgataaaccaatccgatgat 4413640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 24466502 - 24466315
Alignment:
Q  40 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 139  Q
    |||||||| ||||||||||  |  ||||||| |||||||| ||||||||||  ||||||| |||||||||||  | |||||||||||||||||||||||     
T  24466502 ataggggtgtaagtggttcagactaaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccg 24466403  T
Q  140 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    |||||||| ||| ||||||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||    
T  24466402 atccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgat 24466315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 63 - 227
Target Start/End: Complemental strand, 28319454 - 28319290
Alignment:
Q  63 aaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 162  Q
    |||||||| |||| |||||||| ||| ||||||||||||||||||||||  || ||||||||||||||||||||||  ||||||| |||| ||| ||||     
T  28319454 aaaaccaacgaaatcgaaagtctaaatcgaaccaaaccgaaaaaatatctgacattgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatt 28319355  T
Q  163 tagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    || |||||||||||||||| ||||| ||||||||||  ||||| | |||||| ||||| ||||||    
T  28319354 taatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatcaatctgatgat 28319290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 53393333 - 53393204
Alignment:
Q  49 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 148  Q
    ||||||||||| | |||||| |||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||  | ||||||     
T  53393333 taagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaactgaaccgaacc 53393234  T
Q  149 aatcgaaaccgatctagtttggtttggttc 178  Q
    || | ||||||||||||||||||| |||||    
T  53393233 aacctaaaccgatctagtttggttcggttc 53393204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 8606315 - 8606181
Alignment:
Q  44 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 143  Q
    |||| ||||||||||| | |||||| | ||||| || |||| |||   ||||||||||||||| |||||||| |||||||| ||||||  |||||||  |    
T  8606315 gggtgtaagtggttcggacaaaaccgacgaaactgatagtcaaaattaaaccaaaccgaaaaagtatccaactttgtttggctcggttcaaaaccaaatc 8606216  T
Q  144 gaactaatcgaaaccgatctagtttggtttggttc 178  Q
    |||| |||| |||||||||| | |||||| |||||    
T  8606215 gaaccaatctaaaccgatcttggttggttcggttc 8606181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 39839153 - 39839064
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggt 130  Q
    ||||||| ||||||||||| |  ||||| |||||||||||| |||||||| || ||||| |||||| |||   |||||||||||||||||    
T  39839153 taggggtgtaagtggttcggacgaaaccgatgaaaccgaaaatccaaaccaaatcaaactgaaaaagtatttgaccttgtttggttcggt 39839064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 40 - 217
Target Start/End: Complemental strand, 16746727 - 16746550
Alignment:
Q  40 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 139  Q
    |||||| | ||||||||||| | |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  16746727 atagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaaccaaatcgaaaaaatatccaaccttgtttggttcggtttgaaaccg 16746628  T
Q  140 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacca 217  Q
    |||| ||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||| ||||||||||    
T  16746627 atccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 41 - 213
Target Start/End: Original strand, 31895896 - 31896068
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||||||||||| | ||||||||  ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  31895896 taggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccga 31895995  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatga 213  Q
    || |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  31895996 tctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccgatga 31896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 227
Target Start/End: Original strand, 19947711 - 19947894
Alignment:
Q  44 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 143  Q
    |||| ||||||||||| | |||| ||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||    
T  19947711 gggtgtaagtggttcggacaaaatcaacgaatccgaaagtccaaaccgaaccaaaccgaaaaaatatccgacattgtttggttcagtttgaaaccgatcc 19947810  T
Q  144 gaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
     ||| ||||||| | |||||| |||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||    
T  19947811 aaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaaccaatccgatgat 19947894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 16746548 - 16746421
Alignment:
Q  100 cgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 199  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  16746548 cgaaaaaatatccaaccttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatc 16746449  T
Q  200 tgtgaaaccgatgaaccaatccgatgat 227  Q
     |||||| ||||||||||||||||||||    
T  16746448 cgtgaaatcgatgaaccaatccgatgat 16746421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 1498358 - 1498243
Alignment:
Q  63 aaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 162  Q
    |||||| |||||||||||| ||||||||||| ||||| || ||||||||| ||||||||||||||||||  ||||| | | |||| || | ||||||||     
T  1498358 aaaaccgatgaaaccgaaaatccaaaccgaatcaaactgagaaaatatccgaccttgtttggttcggttcaaaaccgaactgaaccaacctaaaccgatg 1498259  T
Q  163 tagtttggtttggttc 178  Q
    |||||  |||||||||    
T  1498258 tagttaagtttggttc 1498243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 29126091 - 29126234
Alignment:
Q  49 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 148  Q
    ||||||||||| | |||||||| ||||  || | |  ||||||||||||||||||||| ||||| |  |||||||| || |||||||||| | |  |||     
T  29126091 taagtggttcggacaaaaccaacgaaatggagaatttaaaccgaaccaaaccgaaaaagtatccgattttgtttgggtcagtttgaaaccgaactaaacc 29126190  T
Q  149 aatcgaaaccgatctagtttggtttggttcatgattttttattt 192  Q
    || | |||||| |||||||| |||||||||   |||||||||||    
T  29126191 aacctaaaccggtctagtttagtttggttctcaattttttattt 29126234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 41092163 - 41092125
Alignment:
Q  51 agtggttcgaataaaaccaatgaaaccgaaagtccaaac 89  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  41092163 agtggttcgaacaaaaccaatgaaaccgaaagtcaaaac 41092125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 30126283 - 30126223
Alignment:
Q  72 gaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggttt 132  Q
    |||| ||||| ||||||||||| |||||  ||||||||| | |||||||||||||| ||||    
T  30126283 gaaatcgaaactccaaaccgaatcaaacaaaaaaaatattcgaccttgtttggttctgttt 30126223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 767 - 580
Alignment:
Q  40 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 139  Q
    |||||||| ||||||||||  |  ||||||| |||||||| ||||||||||  ||||||| |||||||||||  | |||||||||||||||||||||||     
T  767 ataggggtgtaagtggttcagactaaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccg 668  T
Q  140 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    |||||||| ||| ||||||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||    
T  667 atccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgat 580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 7352555 - 7352370
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||| ||||||  | |||||||| ||||||||||||||||| | |||| |||||||||||||||| || || ||||||| ||||||||||| |    
T  7352555 taggggtgtaattggttcagacaaaaccaacgaaaccgaaagtccaaatcaaaccgaaccgaaaaaatatccgactttatttggtttggtttgaaaccga 7352456  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||||||    
T  7352455 tccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgat 7352370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 39695086 - 39695268
Alignment:
Q  40 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 139  Q
    |||||||| |||||||||||   |||||||| |||||||||||||||| ||     |||||||| | |||||| |||||||||||||||||||||||||     
T  39695086 ataggggtgtaagtggttcgggcaaaaccaacgaaaccgaaagtccaaccc-----aaaccgaagagatatccgaccttgtttggttcggtttgaaaccg 39695180  T
Q  140 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    ||| |||| ||||||||| ||| ||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||    
T  39695181 atctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaatctgatgat 39695268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 46993309 - 46993434
Alignment:
Q  102 aaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctg 201  Q
    ||||||||| | ||||||||||| |||||||||||   |||||||  ||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |    
T  46993309 aaaaaatattcgaccttgtttgggtcggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 46993408  T
Q  202 tgaaaccgatgaaccaatccgatgat 227  Q
    |||||||||| |||||||||||||||    
T  46993409 tgaaaccgattaaccaatccgatgat 46993434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 224
Target Start/End: Original strand, 7994998 - 7995128
Alignment:
Q  94 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 193  Q
    |||||| ||||||||||   ||||||||||||||||||  ||| | |||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||     
T  7994998 ccaaactgaaaaaatatttgaccttgtttggttcggttgaaaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcatttt 7995097  T
Q  194 gagatctgtgaaaccgatgaaccaatccgat 224  Q
    |||||  ||||||||||||||||||||||||    
T  7995098 gagattcgtgaaaccgatgaaccaatccgat 7995128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 11727449 - 11727328
Alignment:
Q  96 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 195  Q
    |||||||||||||||   |||||||||||||||||||||||||||||           ||||||||||||||||||||||||| || ||||| |||||||    
T  11727449 aaaccgaaaaaatatatgaccttgtttggttcggtttgaaaccaatca----------aaaccgatctagtttggtttggttcgtggtttttcatttcga 11727360  T
Q  196 gatctgtgaaaccgatgaaccaatccgatgat 227  Q
    |||| || |||||||| |||||||||||||||    
T  11727359 gatccgtaaaaccgataaaccaatccgatgat 11727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 48070614 - 48070772
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||||||||||| | |||| | || ||||||||| || ||||||||| ||||| ||||||||||| |||||||||| || ||||  ||||| |    
T  48070614 taggggtgtaagtggttcggacaaaatcgatcaaaccgaaaatctaaaccgaactaaaccaaaaaaatatccgaccttgtttgatttggttcaaaaccga 48070713  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 199  Q
     ||||||||| | |||||||||||||||| || |||||  | ||||| |||| ||||||    
T  48070714 accgaactaacctaaaccgatctagtttgattcggttctcggtttttaattttgagatc 48070772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 178
Target Start/End: Complemental strand, 3997128 - 3996991
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||  |||| || |||||||||| ||||  ||||| |    
T  3997128 taggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccgtaccaaaccgaagaagaatccgactttgtttggtttggttcaaaaccga 3997029  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttc 178  Q
     || ||| |||| ||||| | || |||||||| |||||    
T  3997028 acctaaccaatctaaaccaaccttgtttggttcggttc 3996991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 46265457 - 46265353
Alignment:
Q  73 aaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 172  Q
    |||||||||||||||||||||||||||| ||||  ||||| |||||||  |||||||||  ||||| | |||||  |||| |||||||||| ||||||||    
T  46265457 aaaccgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtcgggttcggttcaaaaccgaaccgaatcaatctaaaccgatcttgtttggtt 46265358  T
Q  173 tggtt 177  Q
    |||||    
T  46265357 tggtt 46265353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 2922986 - 2923125
Alignment:
Q  73 aaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 172  Q
    ||||||||||||||||| |||||||||| ||||  ||| ||||||||| ||||||||||  ||||| | |||||| |||| | ||||| || ||||| ||    
T  2922986 aaaccgaaagtccaaac-gaaccaaaccaaaaatgtattcaaccttgtatggttcggttcaaaaccgaaccgaaccaatctacaccgaccttgtttgatt 2923084  T
Q  173 tggttcatgattttttatttcgagatctgtgaaaccgatga 213  Q
     ||||| |||||||| |||| ||||||   |||||||||||    
T  2923085 cggttcttgatttttcattttgagatccaagaaaccgatga 2923125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 12013109 - 12013026
Alignment:
Q  49 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggttt 132  Q
    ||||||||| |||||||||| |||||| ||||| |  |||  ||||| |||||||||| ||||| ||||| |||||||||||||    
T  12013109 taagtggtttgaataaaaccgatgaaatcgaaaatttaaattgaaccgaaccgaaaaagtatccgaccttatttggttcggttt 12013026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 27227089 - 27226938
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||||| ||||| | |||||| |||||| | ||||||||||||||| |||||  ||||  ||||| | ||||| ||||| || |  || || |    
T  27227089 taggggtgtaagttgttcggacaaaaccgatgaaatcaaaagtccaaaccgaaacaaacttaaaaggtatcccatcttgtctggtttggatcaaagccga 27226990  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 192  Q
     |||||| |||| ||||||| || |||||||| ||||| || ||||| ||||    
T  27226989 accgaaccaatctaaaccgaccttgtttggttcggttcttggtttttaattt 27226938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 12471911 - 12471855
Alignment:
Q  49 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa 105  Q
    ||||||||||| |||||||| ||||||  |||| |||||||||||| |||| |||||    
T  12471911 taagtggttcggataaaaccgatgaaattgaaaatccaaaccgaacaaaactgaaaa 12471855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 35738291 - 35738239
Alignment:
Q  53 tggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa 105  Q
    ||||||| |||||| | | ||||| |||||||||||||||||| |||||||||    
T  35738291 tggttcggataaaatcgacgaaacggaaagtccaaaccgaaccgaaccgaaaa 35738239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 227
Target Start/End: Original strand, 46655514 - 46655701
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaacca 139  Q
    |||||||  |||||||||| ||||| |||| |||| ||||| ||| |||| ||||||||| |||| ||||||| |||||  ||||||||||||||||||     
T  46655514 taggggtgcaagtggttcggataaatccaacgaaatcgaaaatccgaaccaaaccaaaccaaaaaaaatatccgaccttacttggttcggtttgaaaccg 46655613  T
Q  140 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    |||||||| |||| ||||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||    
T  46655614 atccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 46655701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 44471020 - 44471168
Alignment:
Q  44 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 143  Q
    |||| ||||||||||| | |||||| |||||| ||||| |||||||||||||||||||||||  ||||| ||||||||| ||||||||  ||||| | ||    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccgaacc 44471119  T
Q  144 gaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 192  Q
     ||| |||| ||||||||||||||||||| ||||| || ||||| ||||    
T  44471120 aaaccaatctaaaccgatctagtttggttcggttcttggtttttaattt 44471168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 216
Target Start/End: Complemental strand, 11503513 - 11503337
Alignment:
Q  40 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 139  Q
    |||||||| |||| ||||   |||||||| ||||||| ||||||||||||||||||||||| ||||  ||||| ||||||| ||||  ||||  |||||     
T  11503513 ataggggtgtaagcggttaagataaaaccgatgaaactgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtctggtaaggttcaaaaccg 11503414  T
Q  140 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacc 216  Q
    | |||||| |||||||||||||||  |||||||||||||  ||||||| |||| ||||||   ||||||||| ||||    
T  11503413 aaccgaaccaatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaacc 11503337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 192
Target Start/End: Complemental strand, 30554726 - 30554574
Alignment:
Q  40 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 139  Q
    |||||||| ||| ||||||||| |||| | |||||||||||| |||||| ||| | ||||||||||| ||||| ||||||||| ||||||||  ||| |     
T  30554726 ataggggtgtaaatggttcgaacaaaatcgatgaaaccgaaaatccaaatcgagctaaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcg 30554627  T
Q  140 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 192  Q
    | |||||| |||| ||||||||||||||||||| |||||  ||||||| ||||    
T  30554626 aaccgaaccaatctaaaccgatctagtttggttcggttctcgatttttaattt 30554574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 46892612 - 46892701
Alignment:
Q  49 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacc 138  Q
    |||||||||||   |||||| |||||||  ||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  46892612 taagtggttcgggcaaaaccgatgaaacaaaaaattcaaaccgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttaaaacc 46892701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 27524053 - 27524154
Alignment:
Q  77 cgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggt 176  Q
    |||||||||||||  ||||||||||||||  ||| | |||||||||||||||| |  ||||||| || ||| |||| ||| ||| || |||||||| |||    
T  27524053 cgaaagtccaaactaaaccaaaccgaaaaggtattcgaccttgtttggttcggatcaaaaccaaaccaaaccaatctaaatcgaccttgtttggttcggt 27524152  T
Q  177 tc 178  Q
    ||    
T  27524153 tc 27524154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 779629 - 779533
Alignment:
Q  96 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 192  Q
    ||||||||||| ||||||||||||||| ||||||||  ||||  |  ||||| || | ||||| ||||||||||||| ||||| || ||||| ||||    
T  779629 aaaccgaaaaagtatccaaccttgtttagttcggttcaaaacagaatcgaaccaacctaaaccaatctagtttggttcggttcttggtttttaattt 779533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 23307205 - 23307117
Alignment:
Q  49 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaac 137  Q
    ||||||||||||| |||| | ||||||  ||||||| ||||| |||||||| |||| | ||| ||||||||  ||||||||||| ||||    
T  23307205 taagtggttcgaacaaaatcgatgaaattgaaagtctaaaccaaaccaaactgaaatagtattcaaccttgaatggttcggtttaaaac 23307117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 12937912 - 12937849
Alignment:
Q  43 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaa 106  Q
    ||||| |||||| |||| |||||| | |||||||||||| |||||||||||| ||| |||||||    
T  12937912 ggggtgtaagtgattcggataaaatcgatgaaaccgaaaatccaaaccgaactaaatcgaaaaa 12937849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 26757593 - 26757751
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||||||||| | | ||||||||||||| ||||| |||||| | ||| ||| ||||||| ||| | || ||||||||||  |||| ||||  |    
T  26757593 taggggtgtaagtggtttggacaaaaccaatgaaatcgaaaatccaaatcaaacaaaatcgaaaaagtattcgacgttgtttggtttagtttaaaactga 26757692  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 199  Q
     |||||| || | ||| |||| ||| |||||| ||||| ||  |||| |||| ||||||    
T  26757693 accgaaccaacctaaatcgatatagattggttcggttcttggattttaattttgagatc 26757751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 44285605 - 44285691
Alignment:
Q  86 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 172  Q
    ||||||||  |||||||||||||||   ||||||||||||||||||  ||||| | |||||| || | ||| |||| ||||||||||    
T  44285605 aaaccgaattaaaccgaaaaaatatatgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggtt 44285691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 23659401 - 23659501
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||||||||||  | |||| | |||||||||||| | |||||||  | ||| ||||||| |||| ||  |||||||||||||||  |||||||    
T  23659401 taggggtataagtggttcagacaaaatcgatgaaaccgaaaattcaaaccgttctaaatcgaaaaagtatctaattttgtttggttcggttcaaaaccaa 23659500  T
Q  141 t 141  Q
    |    
T  23659501 t 23659501  T

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Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 31111413 - 31111592
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| |||||||||   | |||| ||| |||||||||| ||||||  |||||||||||||||||||||| ||||||||||||||||||||||||  |    
T  31111413 taggggtgtaagtggtttagacaaaatcaacgaaaccgaaaatccaaattgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaactga 31111512  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatc 220  Q
    || |||| ||| ||||||||||||||||||||||||||||| ||||| |||| ||||||  |||||||||| ||||||||    
T  31111513 tctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaaccaatc 31111592  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 4638207 - 4638340
Alignment:
Q  94 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 193  Q
    ||||||||||||||||||| |||||||| |||||||||||||| | |||||||| |||| | || ||| ||||||||||||||||||| ||||| ||||     
T  4638207 ccaaaccgaaaaaatatccgaccttgttcggttcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcatttt 4638306  T
Q  194 gagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    |||||| |||||||||||||||||||||||||||    
T  4638307 gagatccgtgaaaccgatgaaccaatccgatgat 4638340  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 220
Target Start/End: Complemental strand, 13852453 - 13852276
Alignment:
Q  43 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatc 142  Q
    ||||| ||||| ||||| | |||||||| |||| ||||||||||||  ||| |||| | ||||||||||  || ||||||| |||||||||||||| |||    
T  13852453 ggggtgtaagtagttcggacaaaaccaacgaaatcgaaagtccaaattgaatcaaatcaaaaaaatatctgactttgtttgattcggtttgaaaccgatc 13852354  T
Q  143 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatc 220  Q
    | ||| |||| |||||||||||||||||||||||||||  ||||| |||| |||||| ||||||||||||||||||||    
T  13852353 caaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatc 13852276  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 29109348 - 29109190
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| ||||||||||| | |||||  ||||||| |||| ||||||||||||||||| |||||| ||||| |||||||||||||| |||  ||||| |    
T  29109348 taggggtgtaagtggttcggacaaaactgatgaaactgaaaatccaaaccgaaccaaactgaaaaattatccgaccttgtttggttcagttcaaaaccga 29109249  T
Q  141 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 199  Q
     |||||  || | ||||| |||||||||||||||||||  | ||||| |||| ||||||    
T  29109248 accgaagcaacctaaaccaatctagtttggtttggttctcggtttttaattttgagatc 29109190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 3920029 - 3919857
Alignment:
Q  53 tggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatc 152  Q
    ||||| ||| ||||||||||||||| ||| | ||||| ||| ||||||||||||  || | || |||||||||| ||||  ||||| | |||||| || |    
T  3920029 tggttggaacaaaaccaatgaaacctaaaattcaaactgaatcaaaccgaaaaagcattcgactttgtttggtttggttcaaaaccgaaccgaaccaaac 3919930  T
Q  153 gaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatg 225  Q
     ||||||||||||||||||||||||| | |||||| |||| |||||||    |||||||||||| | ||||||    
T  3919929 taaaccgatctagtttggtttggttcttaatttttaattttgagatctaaagaaccgatgaaccgaaccgatg 3919857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 36009278 - 36009345
Alignment:
Q  160 atctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 227  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||||||||| ||||||||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgat 36009345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 12894099 - 12893980
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 140  Q
    ||||||| | ||||||||  | |||||||| |||| | ||||||||||| |||||||||| ||||  ||||| ||||||||||||||||||  |||| ||    
T  12894099 taggggtgtgagtggttcagacaaaaccaacgaaatcaaaagtccaaactgaaccaaaccaaaaatgtatccgaccttgtttggttcggttcaaaacaaa 12894000  T
Q  141 tccgaactaatcgaaaccga 160  Q
     |||||| |||| |||||||    
T  12893999 accgaaccaatctaaaccga 12893980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 37630375 - 37630461
Alignment:
Q  86 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 172  Q
    ||||||||||||||||||||| |||| ||||||| |||||| ||||  ||| | |||| ||| || | |||| ||||||||||||||    
T  37630375 aaaccgaaccaaaccgaaaaagtatcgaaccttgcttggtttggttcaaaatcgatccaaaccaacctaaactgatctagtttggtt 37630461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 38607020 - 38607141
Alignment:
Q  94 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 193  Q
    |||||||||||| |||||| |||||||||| |||| ||  ||||| | |||||| |||| |||| || || |||||||| ||||| || ||||| ||||     
T  38607020 ccaaaccgaaaatatatccgaccttgtttg-ttcgattcaaaaccgaaccgaaccaatctaaactgaccttgtttggttcggttcttggtttttcatttt 38607118  T
Q  194 gagatctgtgaaaccgatgaacc 216  Q
    ||||||  | |||||||||||||    
T  38607119 gagatccataaaaccgatgaacc 38607141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 5526225 - 5526353
Alignment:
Q  49 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 148  Q
    |||||||| || | |||||||| |||| ||||| ||||||   ||||||||||||||  ||||| ||||||||| ||||||||  ||||  |  |||||     
T  5526225 taagtggtccggacaaaaccaaagaaatcgaaaatccaaattaaaccaaaccgaaaacgtatccgaccttgttttgttcggttcaaaactga-acgaacc 5526323  T
Q  149 aatcgaaaccgatctagtttggtttggttc 178  Q
    || | ||||||||||||||||||| |||||    
T  5526324 aacctaaaccgatctagtttggttcggttc 5526353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 30907029 - 30906942
Alignment:
Q  40 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttc 127  Q
    |||||||| ||||||||| | | |||| | |||||||||||| |||| || |||||||||| ||||| | | | ||||||||||||||    
T  30907029 ataggggtgtaagtggtttggacaaaatcgatgaaaccgaaaatccagactgaaccaaaccaaaaaagttttcgaccttgtttggttc 30906942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 1970 - 1844
Alignment:
Q  101 gaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatct 200  Q
    |||||||||||| ||||||||||||||||||||||| | ||| |||| |||| |||| |||||| |||||||||||||||| ||||| ||||||||||      
T  1970 gaaaaaatatccgaccttgtttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattc 1871  T
Q  201 gtgaaaccgatgaaccaatccgatgat 227  Q
    |||||||||||||||||||||||||||    
T  1870 gtgaaaccgatgaaccaatccgatgat 1844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 7176662 - 7176529
Alignment:
Q  44 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 143  Q
    |||| |||||| |||| | |||||| ||||||||||||   | ||||||||||| |||||||| ||||||||||||||||||| ||||  ||| | | ||    
T  7176662 gggtgtaagtgtttcggacaaaaccgatgaaaccgaaaactctaaccgaaccaacccgaaaaagtatccaaccttgtttggtttggttcaaaatcgaacc 7176563  T
Q  144 gaactaatcgaaaccgatctagtttggtttggtt 177  Q
    |||| || | ||||||||||||||||||| ||||    
T  7176562 gaaccaacctaaaccgatctagtttggttcggtt 7176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 23301441 - 23301548
Alignment:
Q  71 tgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttgg 170  Q
    ||||||||||| | ||||| ||||||||||||||||  || | ||||||||||||||||||  ||||| | |||||| || | |||| ||||||||||||    
T  23301441 tgaaaccgaaaattcaaactgaaccaaaccgaaaaataattcgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaactgatctagtttgg 23301540  T
Q  171 tttggttc 178  Q
    || |||||    
T  23301541 ttcggttc 23301548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 11971456 - 11971546
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 131  Q
    ||||||| |||||||||   ||||||||||||||| |||||  | ||||||||| ||||||||||  ||||| | ||||||||||||||||    
T  11971456 taggggtgtaagtggtttagataaaaccaatgaaatcgaaaacctaaaccgaactaaaccgaaaatgtatccgatcttgtttggttcggtt 11971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 23300455 - 23300583
Alignment:
Q  71 tgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttgg 170  Q
    ||||||||||| | ||||||||||||||||||||||  |  | ||||||||||||||||||  ||||  | |||||| || | |||| |||||||||| |    
T  23300455 tgaaaccgaaaattcaaaccgaaccaaaccgaaaaagaaatcgaccttgtttggttcggttcaaaactgaaccgaaccaacctaaactgatctagtttag 23300554  T
Q  171 tttggttcatgattttttatttcgagatc 199  Q
    || |||||  | ||||| |||| ||||||    
T  23300555 ttcggttctcggtttttaattttgagatc 23300583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 7551525 - 7551423
Alignment:
Q  96 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 195  Q
    ||||||||||  |||||||| ||||||||||||| |  ||||||| |||||| |||| ||||||   | |||||| | ||||| |||||||| |||||||    
T  7551525 aaaccgaaaaggtatccaacattgtttggttcggatcaaaaccaaaccgaaccaatctaaaccggctttgtttgggtcggttcttgatttttcatttcga 7551426  T
Q  196 gat 198  Q
    |||    
T  7551425 gat 7551423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 9826747 - 9826868
Alignment:
Q  51 agtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaacc-ttgtttggttcggtttgaaaccaatccgaacta 149  Q
    ||||||||| | |||||| | |||||| ||| | ||||| ||||||||||| |||| ||||| ||| || ||||||||||||  ||||| | |||||| |    
T  9826747 agtggttcggagaaaaccgaagaaaccaaaaattcaaactgaaccaaaccg-aaaagtatccgacctttatttggttcggttgaaaaccgaaccgaacca 9826845  T
Q  150 atcgaaaccgatctagtttggtt 172  Q
    |   |||||||||||||||||||    
T  9826846 acataaaccgatctagtttggtt 9826868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 23585913 - 23585990
Alignment:
Q  101 gaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttc 178  Q
    |||||| ||||| ||||||||| ||||||||  ||||| | || ||||||   |||||||| ||||||||||||||||    
T  23585913 gaaaaagtatccgaccttgttttgttcggttcaaaaccgaaccaaactaacgtaaaccgatatagtttggtttggttc 23585990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 33729 - 33819
Alignment:
Q  41 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 131  Q
    ||||||| ||||||||||| |||||||||||||||| |||||||||||  |||||||||||||||  ||||  ||||||| ||||| ||||    
T  33729 taggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaattgaaccaaaccgaaaatgtatctgaccttgtctggtttggtt 33819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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