View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_366 (Length: 243)

Name: NF7850A_low_366
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_366
NF7850A_low_366
[»] chr2 (13 HSPs)
chr2 (22-231)||(8579553-8579762)
chr2 (22-229)||(9061209-9061416)
chr2 (22-89)||(9364513-9364580)
chr2 (139-231)||(17566149-17566241)
chr2 (22-89)||(7115835-7115902)
chr2 (192-231)||(7611976-7612015)
chr2 (109-152)||(9274475-9274518)
chr2 (22-89)||(9284380-9284447)
chr2 (192-231)||(9364665-9364704)
chr2 (109-231)||(8573571-8573693)
chr2 (111-161)||(9291899-9291949)
chr2 (22-88)||(10335741-10335807)
chr2 (194-234)||(9328638-9328678)
[»] chr3 (2 HSPs)
chr3 (104-231)||(39427589-39427719)
chr3 (109-231)||(37462443-37462565)
[»] chr4 (2 HSPs)
chr4 (107-231)||(561174-561298)
chr4 (22-85)||(561068-561131)
[»] chr5 (2 HSPs)
chr5 (107-231)||(36224364-36224494)
chr5 (32-88)||(36224295-36224351)
[»] chr1 (4 HSPs)
chr1 (22-81)||(29423150-29423209)
chr1 (22-89)||(29453494-29453561)
chr1 (22-81)||(29443519-29443578)
chr1 (22-81)||(29467978-29468037)
[»] chr7 (4 HSPs)
chr7 (19-80)||(45243552-45243613)
chr7 (19-80)||(45230290-45230351)
chr7 (112-231)||(45243656-45243775)
chr7 (19-80)||(45237808-45237869)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 8579762 - 8579553
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagatcaccttttacttccaacagaaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  8579762 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagattaccttttacttccaacagaac 8579663  T
Q  122 tttacttctatcactagaataacataaaggcttcaaagatcccaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatctcta 221  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8579662 tttacttctatcactagaataacacaaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatctcta 8579563  T
Q  222 aatccatatt 231  Q
    ||||||||||    
T  8579562 aatccatatt 8579553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 9061416 - 9061209
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagatcaccttttacttccaacagaaa 121  Q
    |||||||||||| |||| || |||||| |||||| |||||||||||||||||||||||| ||  |  | |||  |  | |   ||| ||||||||||||     
T  9061416 taggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttcctaagagttttatccaagttaggatttgcttccaacagaac 9061317  T
Q  122 tttacttctatcactagaataacataaaggcttcaaagatcccaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatctcta 221  Q
     |||| || |||||||||||||||||| ||| ||||| |  ||||||||  |||||| ||||| |   | |||||||| | |||||||||||||||||||    
T  9061316 cttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgatttaaccaaagtaaaaagtttacaccaactatctcta 9061217  T
Q  222 aatccata 229  Q
     |||||||    
T  9061216 gatccata 9061209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 9364513 - 9364580
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    ||||||||||| |||||| |||||| | |||||| |||||||| ||||||||||||||||||| ||||    
T  9364513 taggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaacagcttcttacgatct 9364580  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 17566241 - 17566149
Alignment:
Q  139 aataacataaaggcttcaaagatcccaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatctctaaatccatatt 231  Q
    |||||||||||||||||||| ||  ||||||| || |||| | | | ||  | || |||||||||||||||||| ||||||||||||||||||    
T  17566241 aataacataaaggcttcaaatatatcaaaggtatactgaaacgccactcgcccaaggtaaacaatttacaccaattatctctaaatccatatt 17566149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 7115902 - 7115835
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    |||||||||||| ||||||| |||||| ||| || || | ||||||||||| ||||||| ||||||||    
T  7115902 taggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttcctacaatct 7115835  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 7611976 - 7612015
Alignment:
Q  192 aaagtaaacaatttacaccaactatctctaaatccatatt 231  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  7611976 aaagtaaacaatttacaccaactatcttttaatccatatt 7612015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 9274475 - 9274518
Alignment:
Q  109 cttccaacagaaatttacttctatcactagaataacataaaggc 152  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||    
T  9274475 cttccaacagaaccttacttccatcactagaataacataaaggc 9274518  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 9284447 - 9284380
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    |||||||||||| |||| || ||||||  ||||| || | ||||||||||| ||||||||||||||||    
T  9284447 taggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttcttacaatct 9284380  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 9364665 - 9364704
Alignment:
Q  192 aaagtaaacaatttacaccaactatctctaaatccatatt 231  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  9364665 aaagtaaacaatttacaccaactatcttttaatccatatt 9364704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 8573693 - 8573571
Alignment:
Q  109 cttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatcccaaaggtttattgaagcacgaatcctcaaaagtaaacaatttaca 208  Q
    ||||||||||||  ||||||| |||||||||||||| ||||||| || |||||   ||| ||  | |||| ||||| |   | |||||||| | ||||||    
T  8573693 cttccaacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttaca 8573594  T
Q  209 ccaactatctctaaatccatatt 231  Q
    ||||||||||||| | |||||||    
T  8573593 ccaactatctctagaaccatatt 8573571  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 9291899 - 9291949
Alignment:
Q  111 tccaacagaaatttacttctatcactagaataacataaaggcttcaaagat 161  Q
    ||||||||||  ||||||| ||| |||||||||||||||||| ||||||||    
T  9291899 tccaacagaaccttacttccatccctagaataacataaaggcctcaaagat 9291949  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 10335741 - 10335807
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatc 88  Q
    |||||||||||| |||| || ||| || |||||| || | |||||||||||||| ||||||||||||    
T  10335741 taggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttcttacaatc 10335807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 9328638 - 9328678
Alignment:
Q  194 agtaaacaatttacaccaactatctctaaatccatattgtt 234  Q
    |||||| | ||||||||||||||||||| ||||||||||||    
T  9328638 agtaaaaagtttacaccaactatctctatatccatattgtt 9328678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 231
Target Start/End: Original strand, 39427589 - 39427719
Alignment:
Q  104 ttttacttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatcccaaaggtttattgaagcacgaatcc---tcaaaagtaaac 200  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    ||||||  |||||| ||| | |||    |||||||||||    
T  39427589 ttttacttccaacagaactttacttctatcactggaataacataaaggcttcaaagacattaaaggtgaattgaaacaccattcccctacaaaagtaaac 39427688  T
Q  201 aatttacaccaactatctctaaatccatatt 231  Q
    |||||||||||||||| |||| |||||||||    
T  39427689 aatttacaccaactatatctatatccatatt 39427719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 37462443 - 37462565
Alignment:
Q  109 cttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatcccaaaggtttattgaagcacgaatcctcaaaagtaaacaatttaca 208  Q
    ||||||||| ||  ||||||| |||||||||||||||||||||| ||||||||  |||||||  | |||| ||||| |  || | |||| | | ||||||    
T  37462443 cttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttaca 37462542  T
Q  209 ccaactatctctaaatccatatt 231  Q
    ||||||||||||| |||||||||    
T  37462543 ccaactatctctagatccatatt 37462565  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 561174 - 561298
Alignment:
Q  107 tacttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatcccaaaggtttattgaagcacgaatcctcaaaagtaaacaattta 206  Q
    |||||||||||||| |||||||||||||| |||||||| |||||||||| | | |   |||||| || ||||  ||   ||||| ||||||||||||  |    
T  561174 tacttccaacagaactttacttctatcaccagaataacctaaaggcttccatggtgtaaaaggtctactgaaaaacacttcctccaaagtaaacaataca 561273  T
Q  207 caccaactatctctaaatccatatt 231  Q
    |||||||||||||||||||||||||    
T  561274 caccaactatctctaaatccatatt 561298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 561068 - 561131
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttaca 85  Q
    ||||||||||| ||||||| ||| ||  || ||||||||||||||||||||||| ||| |||||    
T  561068 taggaattcctggaacacaggtagctcttttacttttgagatcataccaaaacaactttttaca 561131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 36224364 - 36224494
Alignment:
Q  107 tacttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatccc------aaaggtttattgaagcacgaatcctcaaaagtaaac 200  Q
    |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||  |      ||||||  || |||  || | |||   |||||||||    
T  36224364 tacttccaacagaactttacttctatcactggaataacatgaaggcttcaaagatatcaatttaaaaggtgaatcgaaataccattcccacaaagtaaac 36224463  T
Q  201 aatttacaccaactatctctaaatccatatt 231  Q
    |||||||||||||||||||||||||||||||    
T  36224464 aatttacaccaactatctctaaatccatatt 36224494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 36224295 - 36224351
Alignment:
Q  32 ttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatc 88  Q
    ||||||||| |||||||| | ||||||||||| ||||||||||  ||||||| ||||    
T  36224295 ttgaacacaggtaacttcataacttttgagataataccaaaactccttcttagaatc 36224351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 29423150 - 29423209
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 81  Q
    |||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||    
T  29423150 taggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttct 29423209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 29453561 - 29453494
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    |||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||    
T  29453561 taggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttctcacaatct 29453494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 29443578 - 29443519
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 81  Q
    |||||||||||| |||| || ||||   |||||| |||||||||||||||||||||||||    
T  29443578 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 29443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 29468037 - 29467978
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 81  Q
    |||||||||||| |||| || |||| | |||||| ||||||||||||||||||| |||||    
T  29468037 taggaattccttcaacataattaacatgttcactcttgagatcataccaaaacaacttct 29467978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 45243552 - 45243613
Alignment:
Q  19 aagtaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    |||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||    
T  45243552 aagtaggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttc 45243613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 45230290 - 45230351
Alignment:
Q  19 aagtaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    ||||||||||||||||||||  |||||||| |||||| |||| |||||||||||||||||||    
T  45230290 aagtaggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 45243656 - 45243775
Alignment:
Q  112 ccaacagaaatttacttctatcactagaataacataaaggcttcaaagatcccaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacacca 211  Q
    ||||||||| |||||||| |||||| ||||||||||||||| |||||||| ||||| |   |||||| ||||| |   | |||||||| | |||||||||    
T  45243656 ccaacagaactttacttcgatcactcgaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 45243755  T
Q  212 actatctctaaatccatatt 231  Q
    | |||||||| | |||||||    
T  45243756 aatatctctagaaccatatt 45243775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 45237808 - 45237869
Alignment:
Q  19 aagtaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    |||||||||||||| ||||| || |||||| |||| | ||||| ||||||||||||| ||||    
T  45237808 aagtaggaattcctcgaacataaataacttgttcattcttgaggtcataccaaaacaacttc 45237869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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