View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_368 (Length: 243)

Name: NF7850A_low_368
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_368
NF7850A_low_368
[»] chr3 (1 HSPs)
chr3 (14-243)||(7232422-7232653)
[»] chr8 (3 HSPs)
chr8 (15-114)||(14195641-14195740)
chr8 (15-78)||(45338494-45338557)
chr8 (14-55)||(23812208-23812249)
[»] chr4 (5 HSPs)
chr4 (33-114)||(5587653-5587732)
chr4 (32-114)||(6495226-6495308)
chr4 (17-137)||(16598500-16598619)
chr4 (38-111)||(30609113-30609187)
chr4 (15-57)||(49488168-49488210)
[»] chr5 (2 HSPs)
chr5 (38-114)||(28979024-28979100)
chr5 (34-139)||(5589202-5589307)
[»] scaffold0200 (1 HSPs)
scaffold0200 (67-114)||(25784-25831)
[»] chr1 (3 HSPs)
chr1 (15-61)||(48682122-48682168)
chr1 (81-114)||(4644060-4644093)
chr1 (32-102)||(18575539-18575607)
[»] chr7 (1 HSPs)
chr7 (13-61)||(23022197-23022245)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 7232422 - 7232653
Alignment:
Q  14 agagaaaatcttttatgaacacaatcacaaatcaatattgttaggcacccttccacatgaaatgacaaaaatttaagaaaaaatatttaggcatatcaat 113  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7232422 agagaaaatctttcatggacacaatcacaaatcaatattgttaggcaccctttcacatgaaatgacaaaaatttaagaaaaaatatttaggcatatcaat 7232521  T
Q  114 taaatcattcaatgttgttctctttttctttnnnnnnnnnnnttctctttttctctctcta--attttatggtgtgcccaactatatttatttggacttg 211  Q
    ||||||||||||| |||||||||||||||||           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7232522 taaatcattcaattttgttctctttttctttaaaaaaaattattctctttttctctctctatgattttatggtgtgcccaactatatttatttggacttg 7232621  T
Q  212 tgtccaatgaagtatatctcgtgaccaaatga 243  Q
    ||||||||||||||||||||||||||||||||    
T  7232622 tgtccaatgaagtatatctcgtgaccaaatga 7232653  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 14195740 - 14195641
Alignment:
Q  15 gagaaaatcttttatgaacacaatcacaaatcaatattgttaggcac--ccttccacatgaaatgacaaaaatttaagaaaaaatatttaggcatatcaa 112  Q
    |||||||||||| ||| |||||||||||||||||| || |||| |||  ||||  ||||||||||| ||||| | |||||||||||||||| ||||||||    
T  14195740 gagaaaatctttcatggacacaatcacaaatcaattttattagacacatcctt--acatgaaatgaaaaaaaataaagaaaaaatatttagtcatatcaa 14195643  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 45338494 - 45338557
Alignment:
Q  15 gagaaaatcttttatgaacacaatcacaaatcaatattgttaggcacccttccacatgaaatga 78  Q
    |||||| ||||| ||||||||||||||| |||||| ||||||||||| |   ||||||||||||    
T  45338494 gagaaagtctttgatgaacacaatcacatatcaattttgttaggcacaccctcacatgaaatga 45338557  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 23812208 - 23812249
Alignment:
Q  14 agagaaaatcttttatgaacacaatcacaaatcaatattgtt 55  Q
    ||||||||||||| ||||||||||| |||||||||| |||||    
T  23812208 agagaaaatctttcatgaacacaattacaaatcaattttgtt 23812249  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 5587653 - 5587732
Alignment:
Q  33 cacaatcacaaatcaatattgtt-aggcacccttccacatgaaatgacaaaaatttaagaaaaaatatttaggcatatcaatt 114  Q
    ||||||||||||| ||||||||| |||||||||  |||||||||||| |||||||||||||||||||||||| || |||||||    
T  5587653 cacaatcacaaataaatattgtttaggcaccct--cacatgaaatga-aaaaatttaagaaaaaatatttagtcaaatcaatt 5587732  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 6495226 - 6495308
Alignment:
Q  32 acacaatcacaaatcaatattgttaggcacccttccacatgaaatgacaaaaatttaagaaaaaatatttaggcatatcaatt 114  Q
    ||||||| | |||||||| ||||||||||| |   || ||||||| | ||| |||||||||||||||||||| ||||||||||    
T  6495226 acacaataataaatcaattttgttaggcacacactcatatgaaataaaaaatatttaagaaaaaatatttagtcatatcaatt 6495308  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 16598500 - 16598619
Alignment:
Q  17 gaaaatcttttatgaacacaatcacaaatcaatattg-ttaggcacccttccacatgaaatgacaaaaatttaagaaaaaatatttaggcatatcaatt- 114  Q
    |||||||||| ||| |||||||||||||| ||||||| |||| ||||||  || ||||||||| ||||||| ||| |||| |||||||  | |||||||     
T  16598500 gaaaatctttcatggacacaatcacaaatgaatattgtttagacaccct--catatgaaatga-aaaaattaaaggaaaagtatttagttaaatcaattg 16598596  T
Q  115 aaatcattcaatgttgttctctt 137  Q
    | || ||||||| ||||||||||    
T  16598597 acattattcaattttgttctctt 16598619  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 30609113 - 30609187
Alignment:
Q  38 tcacaaatcaatattgttaggcacccttccacatgaaatg-acaaaaatttaagaaaaaatatttaggcatatca 111  Q
    ||||| |||||||||||||||||| | | ||||||||||| | ||||| ||| |||||| ||||||| |||||||    
T  30609113 tcacagatcaatattgttaggcacaccttcacatgaaatgaaaaaaaaattaggaaaaagtatttagtcatatca 30609187  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 49488168 - 49488210
Alignment:
Q  15 gagaaaatcttttatgaacacaatcacaaatcaatattgttag 57  Q
    |||||||||||||||| |||||||||||||||||  |||||||    
T  49488168 gagaaaatcttttatggacacaatcacaaatcaactttgttag 49488210  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 28979024 - 28979100
Alignment:
Q  38 tcacaaatcaatattgttaggcacccttccacatgaaatgacaaaaatttaagaaaaaatatttaggcatatcaatt 114  Q
    |||||||||||| |||||||||||     |||||||||||| ||||||| |||||||||||||||  ||||||||||    
T  28979024 tcacaaatcaattttgttaggcacatcctcacatgaaatgaaaaaaattaaagaaaaaatatttaatcatatcaatt 28979100  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 5589307 - 5589202
Alignment:
Q  34 acaatcacaaatcaatattgtt-aggcacccttccacatgaaatgacaaaaatttaagaaaaaatatttaggcatatc-aattaaatcattcaatgttgt 131  Q
    ||||||| |||| |||||| || |||||||||  |||||||||||| ||||||| || ||||||||||||  || ||| ||| | || ||||||| ||||    
T  5589307 acaatcataaataaatattatttaggcaccct--cacatgaaatgaaaaaaattaaaaaaaaaatatttaatcaaatcaaatgacattattcaattttgt 5589210  T
Q  132 tctctttt 139  Q
    ||||||||    
T  5589209 tctctttt 5589202  T

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Target: scaffold0200 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 25784 - 25831
Alignment:
Q  67 cacatgaaatgacaaaaatttaagaaaaaatatttaggcatatcaatt 114  Q
    ||||| ||||||  ||||||||||||||||||||||| ||||||||||    
T  25784 cacattaaatgagcaaaatttaagaaaaaatatttagtcatatcaatt 25831  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 48682168 - 48682122
Alignment:
Q  15 gagaaaatcttttatgaacacaatcacaaatcaatattgttaggcac 61  Q
    |||||||||||| ||||||| || ||||||||||| |||||||||||    
T  48682168 gagaaaatctttgatgaacagaaacacaaatcaattttgttaggcac 48682122  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 4644060 - 4644093
Alignment:
Q  81 aaaatttaagaaaaaatatttaggcatatcaatt 114  Q
    ||||||||||||||||||||||| ||||||||||    
T  4644060 aaaatttaagaaaaaatatttagtcatatcaatt 4644093  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 18575539 - 18575607
Alignment:
Q  32 acacaatcacaaatcaatattg-ttaggcacccttccacatgaaatgacaaaaatttaagaaaaaatattta 102  Q
    |||||||||||||| ||||||| |||||||||||  || |||| |||| |||||||||||||||| ||||||    
T  18575539 acacaatcacaaataaatattgtttaggcaccct--catatgatatga-aaaaatttaagaaaaagtattta 18575607  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 23022197 - 23022245
Alignment:
Q  13 gagagaaaatcttttatgaacacaatcacaaatcaatattgttaggcac 61  Q
    |||| ||||||||||||| |||||| ||||||| ||| |||||||||||    
T  23022197 gagaaaaaatcttttatggacacaaacacaaattaattttgttaggcac 23022245  T

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