View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_373 (Length: 242)
Name: NF7850A_low_373
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_373 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 18029249 - 18029049
Alignment:
| Q |
19 |
ttgttgcctgcattcgtgaggctctgaaggaggtttgctttctccttaagtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcac |
118 |
Q |
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| T |
18029249 |
ttgttacctgcattcgtgaggctctgaaggaggtttgctttctccttaagtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcac |
18029150 |
T |
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| Q |
119 |
atgtaccatgtttctcccattcatgtgaccagaatctaaaaccattgctacttggacagctcagagatggccaattcttctccatgttcttcattaggtc |
218 |
Q |
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| T |
18029149 |
atgtaccatgtttctcccattcatgtgaccagaatctaaaaccattgctacttggacagctcagagatggccaattcttctccatgttcttcattaggtc |
18029050 |
T |
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| Q |
219 |
t |
219 |
Q |
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| T |
18029049 |
t |
18029049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 18034998 - 18034871
Alignment:
| Q |
67 |
agtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcacatgtaccatgtttctcccattcatgtgaccagaatctaaaaccattgc |
166 |
Q |
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| T |
18034998 |
agtttgagagctgtttgaaagtagtcatgttgagtaagcttagattctgaacaggtaccatgtttcatccattcatgtgaccaaagtctaataccatttc |
18034899 |
T |
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| Q |
167 |
tacttggacagctcagagatggccaatt |
194 |
Q |
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| T |
18034898 |
cactagggcagctcaaagatggccaatt |
18034871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 18047695 - 18047613
Alignment:
| Q |
67 |
agtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcacatgtaccatgtttctcccattcatgtgacca |
149 |
Q |
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| T |
18047695 |
agtttgagagccgtttgaaagtagtcatgttgagtaagcttagattctgaacaggtaccatgtttcatccattcatgtgacca |
18047613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 18052678 - 18052596
Alignment:
| Q |
67 |
agtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcacatgtaccatgtttctcccattcatgtgacca |
149 |
Q |
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| T |
18052678 |
agtttgagagctgtttgaaagtagtcatgttgagaaagcttagattctgaacatgtgccatgtttcatccattcatgtgacca |
18052596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 17999728 - 17999654
Alignment:
| Q |
79 |
gtttcaaagtactcatgttgatcaagctcagattctgcacatgtaccatgtttctcccattcatgtgaccagaat |
153 |
Q |
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| T |
17999728 |
gtttcaaaataatcatgttgcttaagaactgattctgaacaagtaccatgtttctcccattcatgtgtccagaat |
17999654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 3616899 - 3616802
Alignment:
| Q |
123 |
accatgtttctcccattcatgtgaccagaatctaaaaccattgctacttggacagctcagagatggccaattcttctccatgttcttcattaggtcta |
220 |
Q |
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| T |
3616899 |
accatgtttctcccattcatgtgactagaatctaaaacaattgctgcttggacagctcaaagatggtcaattcttctacatgttcttaattaggtcta |
3616802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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