View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_376 (Length: 241)
Name: NF7850A_low_376
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_376 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 38145217 - 38145418
Alignment:
| Q |
20 |
atttcatacaacaatttacactccaaatgaaccttcattcgcaaccatccttgattccttagcaatgaacctaaggtgtttggcaccatctacaccgaaa |
119 |
Q |
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| T |
38145217 |
atttcatacaacaatttacactccaaatgaaccttcattcgcaaccatccttgattccttagcaatgaacctaaggtgtttggcaccatctacaccgaaa |
38145316 |
T |
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| Q |
120 |
cccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttggaatccatctaagagtaagaagtggtggcc |
219 |
Q |
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| T |
38145317 |
cccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttggaatccatctaagagtaagaagtggtggcc |
38145416 |
T |
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| Q |
220 |
at |
221 |
Q |
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|| |
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| T |
38145417 |
at |
38145418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 11787533 - 11787402
Alignment:
| Q |
90 |
ctaaggtgtttggcaccatctacaccgaaacccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttg |
189 |
Q |
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| T |
11787533 |
ctaaggtatttggtaccttctgctccaaaacccgaattcatattcacacccttaaccgattcacatgtccaagtagctgttacttgttcaaagaaacttg |
11787434 |
T |
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| Q |
190 |
gaatccatctaagagtaagaagtggtggccat |
221 |
Q |
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| T |
11787433 |
gtattcatctaagagtaagaagtggtggccat |
11787402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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