View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_378 (Length: 241)
Name: NF7850A_low_378
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_378 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 43500659 - 43500436
Alignment:
| Q |
18 |
atatttttcttctttatcttgtttacatcattactgtttcaacttcagatttgtatgaacaaatataatttaactagtgtcacgttccgccacnnnnnnn |
117 |
Q |
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| T |
43500659 |
atatttttcttctttatcttgtttacatcattactgtttcaacttcagatttgtatgaacagatataatttaactagtgtcacgttccgccaattttttt |
43500560 |
T |
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| Q |
118 |
aaacagtgctatagctttccagtgtatgttacttacctgaataacaacagagcaaggaggcggcatgtaaaactcaagaccagcatcagagaaaccgaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43500559 |
aaacagtgctatagctttccagtgtatgttacttacctgaataacaacagaacaaggaggcggcatgtaaaactcaagaccagcatcagagaaaccgaat |
43500460 |
T |
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| Q |
218 |
cgtacctaaaatttggaaggaaaa |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
43500459 |
cgtacctaaaatttggaaggaaaa |
43500436 |
T |
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