View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_38 (Length: 428)
Name: NF7850A_low_38
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 413
Target Start/End: Complemental strand, 1831845 - 1831449
Alignment:
| Q |
10 |
agggtcaactagctccttatcttcattctttacacacctaaggt-cacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
108 |
Q |
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||||||||||||||| | |||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831845 |
agggtcaactagctcttcatcttcattctttacaagcttaagattcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
1831746 |
T |
|
| Q |
109 |
atatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatct |
208 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||| |
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| T |
1831745 |
atatttgtagcatatttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaaatcagtcatct |
1831646 |
T |
|
| Q |
209 |
caaattctctcatcatttgtcttttgaaatttttctatctatgctatgttgcttccagttaccactaagccattaacatatagacatataaatatcatat |
308 |
Q |
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|||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| ||||| || |
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| T |
1831645 |
caaattctgtcatcatttgtcttttg-aatttttctgtctatgttatgttgcttccagttaacactaagtcattaacatatagacagataagtatcagat |
1831547 |
T |
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| Q |
309 |
cattaccttttttattcttcacacgcacacacacataaaccatattcaactttgcatttgataaa-tttttgttgaactagaaagttgaccatccttttg |
407 |
Q |
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| T |
1831546 |
cattaccttttttattctttacacacacac--------accatattcagctttgcatttgataaattttttgttgaactagaaacttgaccatccttttg |
1831455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 395
Target Start/End: Original strand, 15490418 - 15490740
Alignment:
| Q |
64 |
ggtgtagatgcaggattgaagcccatcatgttgaatctctttaaaatatttgtagcatattt--cttctggtgcaccactaaacattatgaagttttagt |
161 |
Q |
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|||||| ||| ||||||| | | |||||||||||||||||| | ||||| || ||| ||| |||||| |||| | |||||| || | |||||| | | |
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| T |
15490418 |
ggtgtatatgtaggattgcaactcatcatgttgaatctcttaagaatatcaataacatgtttatcttctgatgcatccctaaaccttttaaagtttaatt |
15490517 |
T |
|
| Q |
162 |
gaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcatcatttgtcttttgaaatttttctatctatgctatgttgct |
261 |
Q |
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||||||||| ||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||| |||| || |||| ||| ||| ||| | |
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| T |
15490518 |
gaattccatttcaaggaagtatattaactttcccaaatcagccatatcaaattctctcatcatttgtcttatgaa-ttcttctttctcaattatattggt |
15490616 |
T |
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| Q |
262 |
tccagttaccactaagccattaacatatagacatataaatatcatatcattaccttttttattcttcacacgcacacacacataaaccatattcaacttt |
361 |
Q |
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| T |
15490617 |
tccagttaccacgaaatcatcaacatatagacaaataagcatcagatttctacctttgttattctt----------cacatacaaacaatattcaacttt |
15490706 |
T |
|
| Q |
362 |
gcatttgataaatttttgttgaactagaaagttg |
395 |
Q |
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|||||||| ||||| | |||||||||||||||| |
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|
| T |
15490707 |
gcatttgacaaattcctattgaactagaaagttg |
15490740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 276
Target Start/End: Original strand, 16944109 - 16944264
Alignment:
| Q |
122 |
atttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
221 |
Q |
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||||||||||||||| |||||| | | ||| |||| ||||||||| || |||||||| ||| |||||||||||||| ||| || |||||| |||| |
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| T |
16944109 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
16944208 |
T |
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| Q |
222 |
catttgtcttttgaaat-ttttctatctatgctatgttgcttccagttaccactaa |
276 |
Q |
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||||||||||||||| | || | |||||| |||| ||||||| |||||||||||| |
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| T |
16944209 |
catttgtcttttgaattcttgtatatctaagctaaattgcttctagttaccactaa |
16944264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 276
Target Start/End: Original strand, 17014774 - 17014929
Alignment:
| Q |
122 |
atttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
221 |
Q |
| |
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||||||||||||||| |||||| | | ||| |||| ||||||||| || |||||||| ||| |||||||||||||| ||| || |||||| |||| |
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| T |
17014774 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
17014873 |
T |
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| Q |
222 |
catttgtcttttgaaat-ttttctatctatgctatgttgcttccagttaccactaa |
276 |
Q |
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||||||||||||||| | || | |||||| |||| ||||||| |||||||||||| |
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| T |
17014874 |
catttgtcttttgaattcttgtatatctaagctaaattgcttctagttaccactaa |
17014929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 9817073 - 9816931
Alignment:
| Q |
94 |
ttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttc |
193 |
Q |
| |
|
||||||||||| ||||||| | | ||||||||||||| ||||| |||||| | | ||| |||||||||||||| || |||| ||||||| ||||| ||| |
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| T |
9817073 |
ttgaatctcttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttc |
9816974 |
T |
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| Q |
194 |
ccaaatcttccatctcaaattctctcatcatttgtcttttgaa |
236 |
Q |
| |
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||||| | ||| ||||| ||| ||||||||||||||||||| |
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| T |
9816973 |
ccaaaccagtcatgtcaaactctttcatcatttgtcttttgaa |
9816931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 30065339 - 30065210
Alignment:
| Q |
65 |
gtgtagatgcaggattgaagcccatcatgttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaa |
164 |
Q |
| |
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||||||||||||||||| || || ||||||||| ||||| | ||||| | |||||| |||||||| ||| |||| || || |||||||||||||| |
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| T |
30065339 |
gtgtagatgcaggattgcagttcaacatgttgaacctcttgagaatatcagaagcatacttcttctgatgcttaactagaccttcagaagttttagtgaa |
30065240 |
T |
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| Q |
165 |
ttccatcccaaggaaatattttaactttcc |
194 |
Q |
| |
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|||||| |||||||| ||| |||||||||| |
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| T |
30065239 |
ttccataccaaggaagtatgttaactttcc |
30065210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 413
Target Start/End: Complemental strand, 30065065 - 30065002
Alignment:
| Q |
350 |
atattcaactttgcatttgataaatttttgttgaactagaaagttgaccatccttttgttccat |
413 |
Q |
| |
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||||||| |||||||||||| ||||| ||| || |||||||||||||| ||||| || |||||| |
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| T |
30065065 |
atattcagctttgcatttgacaaattcttgctgcactagaaagttgacaatcctcttattccat |
30065002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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