View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_380 (Length: 241)
Name: NF7850A_low_380
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_380 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 38178034 - 38178121
Alignment:
| Q |
3 |
tgttactttgataagttttaaaattcaattcacctaatttatttattttaaataaacagtgttgtgtgtaaagaaaaaatcaaatatt |
90 |
Q |
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| T |
38178034 |
tgttactttgataagttttaaaattcaattcacctaatttatttattttaaataaacagtgttgtgtgaaagaaaaaaatcaactatt |
38178121 |
T |
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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 38178112 - 38178203
Alignment:
| Q |
109 |
atcaaccatttaaaggtaactatatatttgaatgtttgtttgtacctcctaactcaatcgataatat-taaatagttaaattaaacattttt |
199 |
Q |
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| T |
38178112 |
atcaactatttaaagataattatatatttgagtgtttgtttgtatctcctaactcaatcgataatatcaaaattattaaattaaacattttt |
38178203 |
T |
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