View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_381 (Length: 240)
Name: NF7850A_low_381
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_381 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 2623433 - 2623661
Alignment:
| Q |
7 |
tttggtgtttgatcaaggatgtgaagagtctcgttataagttagaagtctcacattgaataaaagaatggatgttgagcgatatatatgtgagagaactc |
106 |
Q |
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| T |
2623433 |
tttggtgtttgatcaaggatgtgaagagtctcgttataagttataagtctcacattgaataaaagaatggatgttgagcgatatatctgtgagagaactc |
2623532 |
T |
|
| Q |
107 |
tatattgttgagtattgctcatatatacgcaaaaaaggggcaaggggtggagaaggagttgaactagggtagtgttgcgaagctccctccatttattgta |
206 |
Q |
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| T |
2623533 |
tatattgttgagtattgctcatatatacgcaaaaaaggggcaaggggtggagaaggagttgaactagggtagtgttgcgaagctccctccatttatcgta |
2623632 |
T |
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| Q |
207 |
aactggactgtaatattgtatatattagt |
235 |
Q |
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| T |
2623633 |
aactggactgtaatattgtatatattagt |
2623661 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 37841563 - 37841516
Alignment:
| Q |
111 |
ttgttgagtattgctcatatatacgcaaaaaaggggcaaggggtggag |
158 |
Q |
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| T |
37841563 |
ttgttgagtatggctcatatatacacaaaagaggggcaaggggtggag |
37841516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 39129253 - 39129308
Alignment:
| Q |
142 |
aggggcaaggggtggagaaggagttgaactagggtagtgttgcgaagctccctcca |
197 |
Q |
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| T |
39129253 |
aggggcaaagggtggtgaaggagctgagctagcgtactgttgcgaagctccctcca |
39129308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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