View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_384 (Length: 240)

Name: NF7850A_low_384
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_384
NF7850A_low_384
[»] chr5 (5 HSPs)
chr5 (25-222)||(1501413-1501610)
chr5 (29-80)||(25956008-25956059)
chr5 (25-79)||(38280317-38280371)
chr5 (29-81)||(7886354-7886406)
chr5 (24-80)||(38951381-38951437)
[»] chr7 (10 HSPs)
chr7 (25-81)||(11765706-11765762)
chr7 (25-80)||(496683-496738)
chr7 (29-82)||(7527312-7527365)
chr7 (29-80)||(25185981-25186032)
chr7 (24-81)||(4649480-4649537)
chr7 (25-80)||(42535258-42535313)
chr7 (29-81)||(2286457-2286509)
chr7 (24-81)||(31427303-31427362)
chr7 (25-80)||(48057743-48057798)
chr7 (25-73)||(23844642-23844690)
[»] chr3 (5 HSPs)
chr3 (24-80)||(29836812-29836868)
chr3 (25-81)||(49786392-49786448)
chr3 (29-86)||(47940820-47940877)
chr3 (24-80)||(8436939-8436995)
chr3 (25-80)||(8152977-8153034)
[»] chr4 (1 HSPs)
chr4 (33-80)||(52055200-52055247)
[»] chr2 (2 HSPs)
chr2 (24-77)||(11828960-11829013)
chr2 (25-80)||(13922185-13922240)
[»] chr1 (4 HSPs)
chr1 (25-80)||(20186885-20186940)
chr1 (25-80)||(51787272-51787327)
chr1 (25-80)||(30339636-30339691)
chr1 (25-58)||(9673013-9673046)
[»] chr8 (2 HSPs)
chr8 (29-80)||(4076992-4077043)
chr8 (29-75)||(3780407-3780453)
[»] chr6 (1 HSPs)
chr6 (29-80)||(33594567-33594618)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 1501413 - 1501610
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactcaaaattatgaaccacagcaacgaaatcttttgcacctgaagagg 124  Q
    |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  1501413 tttatgtggaggtttaagtgtgtatgtcacctatggatctgcatgtatcaccactcaaaattatgaaccacagtaatgaaatcttttgcacctgaagagg 1501512  T
Q  125 gagctttattagagcctagaggatcctcaaacatcaaaatgatttgattcaatgttgttaccnnnnnnncattgaggaaaaacttttacttgcacagg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||| ||||    
T  1501513 gagctttattagagcctagaggatcctcaaacatcaaaatgatttgattcaatgttgttacctttttttcattaaggaaaaacttttacttgctcagg 1501610  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 25956008 - 25956059
Alignment:
Q  29 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  25956008 tgtggaggtttaaatgtgtatgccacctatgagtgtgcatgtatcaccactc 25956059  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 38280317 - 38280371
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccact 79  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  38280317 tttatgtggaggtttaagtgtgtataccacctatggatgtacatgtatcaccact 38280371  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 7886406 - 7886354
Alignment:
Q  29 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactca 81  Q
    |||||||||||||||||||||| ||||||| | | |||||| |||||||||||    
T  7886406 tgtggaggtttaagtgtgtatgtcacctataagtatgcatgaatcaccactca 7886354  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 38951437 - 38951381
Alignment:
Q  24 atttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    |||| ||| ||| ||||||| | ||||||| |||||||||||||||||||| |||||    
T  38951437 atttgtgttgagatttaagtatatatgccatctatgaatgtgcatgtatcatcactc 38951381  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 11765762 - 11765706
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactca 81  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  11765762 tttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactca 11765706  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 496738 - 496683
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  496738 tttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 496683  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 7527312 - 7527365
Alignment:
Q  29 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactcaa 82  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  7527312 tgtggaggtttaagtgtgtatgccaccaatgaatatgcatgtatcacccctcaa 7527365  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 25185981 - 25186032
Alignment:
Q  29 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  25185981 tgtggaggtttaagtgtgtatgtcacctatgagtgtgcatgcatcaccactc 25186032  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 4649480 - 4649537
Alignment:
Q  24 atttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactca 81  Q
    |||||||||||| ||||| |||||||||||| ||||||| ||||| ||||||||||||    
T  4649480 atttatgtggagttttaaatgtgtatgccacttatgaatttgcatctatcaccactca 4649537  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 42535258 - 42535313
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||| ||||| |||||    
T  42535258 tttatgtggaggtttaagtgtgtatgtcacctatgagtgtacatatatcatcactc 42535313  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 2286509 - 2286457
Alignment:
Q  29 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactca 81  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||| |||||    
T  2286509 tgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatcactactca 2286457  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 31427303 - 31427362
Alignment:
Q  24 atttatgtggaggtttaagtgtgtatgccac--ctatgaatgtgcatgtatcaccactca 81  Q
    ||||||| |||||||||| | ||||||||||  ||||| |||||||||||||||||||||    
T  31427303 atttatgcggaggtttaattatgtatgccacacctatggatgtgcatgtatcaccactca 31427362  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 48057743 - 48057798
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    |||||||||| |||||| | |||||||||||||||  ||| |||||||||||||||    
T  48057743 tttatgtggaagtttaaatatgtatgccacctatgggtgtacatgtatcaccactc 48057798  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 23844690 - 23844642
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 73  Q
    ||||||||||| ||| ||||||||||  ||||||| |||||||||||||    
T  23844690 tttatgtggagatttgagtgtgtatgttacctatggatgtgcatgtatc 23844642  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 29836812 - 29836868
Alignment:
Q  24 atttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29836812 atttgtgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtatcaccactc 29836868  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 49786448 - 49786392
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactca 81  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||| ||||    
T  49786448 tttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccgctca 49786392  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 47940877 - 47940820
Alignment:
Q  29 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactcaaaatt 86  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||| ||||| ||||    
T  47940877 tgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatcactactcataatt 47940820  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 8436939 - 8436995
Alignment:
Q  24 atttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    |||||||| ||||||||| |||||||||||||||||  ||| ||| |||||||||||    
T  8436939 atttatgtagaggtttaaatgtgtatgccacctatgggtgtacatatatcaccactc 8436995  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 8153034 - 8152977
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgc--atgtatcaccactc 80  Q
    |||||||||||||||| |||||||||||||||||   |||||  ||||||||||||||    
T  8153034 tttatgtggaggtttaggtgtgtatgccacctataggtgtgcatatgtatcaccactc 8152977  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 52055200 - 52055247
Alignment:
Q  33 gaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52055200 gaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 52055247  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 11829013 - 11828960
Alignment:
Q  24 atttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcacca 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  11829013 atttatgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtctcacca 11828960  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 13922240 - 13922185
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  13922240 tttacgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 13922185  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 20186885 - 20186940
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  20186885 tttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 20186940  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 51787327 - 51787272
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||    
T  51787327 tttatgtgaaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 51787272  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 30339691 - 30339636
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    ||||||| |||||||||||||||||||||||||||  ||| |||||||||||||||    
T  30339691 tttatgtagaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 30339636  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 9673013 - 9673046
Alignment:
Q  25 tttatgtggaggtttaagtgtgtatgccacctat 58  Q
    ||||||||||||||||||||||||||||||||||    
T  9673013 tttatgtggaggtttaagtgtgtatgccacctat 9673046  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 4076992 - 4077043
Alignment:
Q  29 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    |||||||||||||||||||||||||||||||  | ||||||||||| |||||    
T  4076992 tgtggaggtttaagtgtgtatgccacctatgggtatgcatgtatcatcactc 4077043  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 3780407 - 3780453
Alignment:
Q  29 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcac 75  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||||    
T  3780407 tgtggaggtttgagtgtgtatgccacctatggatgtacatgtatcac 3780453  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 33594567 - 33594618
Alignment:
Q  29 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 80  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  33594567 tgtgaaggtttaagtgtgtatgccaccaatggatgtgcatgtatcactactc 33594618  T

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