View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_391 (Length: 238)
Name: NF7850A_low_391
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_391 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 37766244 - 37766026
Alignment:
| Q |
20 |
gacacttccaccttctataactacttttgcagctaaggtaggaaagaaagtaacttgaccatcttctgaaggatcggagttcctcctacctgatacaacc |
119 |
Q |
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| T |
37766244 |
gacacttccaccttctataactacttttgcagctaaggtaggaaagaaagtaacttgaccatcttctgatggatcggagttcctcctacccgatacaacc |
37766145 |
T |
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| Q |
120 |
tcgaaaagcatcattccgtagctataagcatcggctttggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcctctcatgg |
219 |
Q |
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| T |
37766144 |
tcgaaaagcatcattccgtagctataaacatcagctttggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcctctcatgg |
37766045 |
T |
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| Q |
220 |
ttgttaggaccctgctgaa |
238 |
Q |
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| T |
37766044 |
ttgttaggaccctgctgaa |
37766026 |
T |
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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 212
Target Start/End: Original strand, 37799519 - 37799694
Alignment:
| Q |
37 |
taactacttttgcagctaaggtaggaaagaaagtaacttgaccatcttctgaaggatcggagttcctcctacctgatacaacctcgaaaagcatcattcc |
136 |
Q |
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| T |
37799519 |
taactactgtagcagccaaggttggaaagaaagtattttggtcatctgcagatggatcagaattccttttacctgatacaacctcaaaaagcatcattcc |
37799618 |
T |
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| Q |
137 |
gtagctataagcatcggctttggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcct |
212 |
Q |
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| T |
37799619 |
ataactgtaaacatcagatttggctgtgatagcagccctagatatccactctggggaaagatagcctcttgatcct |
37799694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 238
Target Start/End: Complemental strand, 16407 - 16214
Alignment:
| Q |
45 |
tttgcagctaaggtaggaaagaaagtaacttgaccatcttctgaaggatcggagttcctcctacctgatacaacctcgaaaagcatcattccgtagctat |
144 |
Q |
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| T |
16407 |
tttgcagctaaggtaggaaagaatctaacatggccatcttcagaaggatcggagtttcttctacctgacactagctcgaaaagcatcattccgtagctgt |
16308 |
T |
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| Q |
145 |
aagcatcggctttggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcctctcatggttgttaggaccctgctgaa |
238 |
Q |
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| T |
16307 |
aaacatcggctttagcggttatagcaactcctgaaatccactctggagctagatagcctcttgttcctctcatggtagtgaggacccggctgaa |
16214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 38388258 - 38388077
Alignment:
| Q |
45 |
tttgcagctaaggtaggaaagaaagtaacttgaccatctt----ctgaaggatcggagttcctcctacctgatacaacctcgaaaagcatcattccgtag |
140 |
Q |
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| T |
38388258 |
tttgcagccaaagtaggaaagaatctaacatggccatcttaattcggaaggatcagagtttcttcttcctgacacgagctcgaaaagcatcattctgtag |
38388159 |
T |
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| Q |
141 |
ctataagcatcggctttggctgtaatagccacgccagaaatccac---tccggagcaaggtagcctcttgttcctctcatgg |
219 |
Q |
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| T |
38388158 |
ttgtaaacatcggctttagcggttatagaaactcccgaaatccactcatctggagctagatagcctcttgttcctctcatgg |
38388077 |
T |
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