View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_397 (Length: 237)

Name: NF7850A_low_397
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_397
NF7850A_low_397
[»] chr3 (21 HSPs)
chr3 (2-229)||(33399475-33399702)
chr3 (2-228)||(14399496-14399722)
chr3 (11-229)||(46992149-46992367)
chr3 (2-229)||(7841909-7842136)
chr3 (2-211)||(36816410-36816619)
chr3 (13-229)||(48249772-48249988)
chr3 (2-229)||(21955132-21955359)
chr3 (2-229)||(29930308-29930535)
chr3 (2-229)||(29979462-29979689)
chr3 (11-209)||(13746624-13746822)
chr3 (11-211)||(77923-78123)
chr3 (11-209)||(9428736-9428934)
chr3 (11-209)||(30946545-30946743)
chr3 (2-211)||(7838554-7838763)
chr3 (2-229)||(6504849-6505076)
chr3 (11-209)||(3949703-3949901)
chr3 (11-209)||(6741847-6742045)
chr3 (11-209)||(8159886-8160084)
chr3 (11-209)||(16445580-16445778)
chr3 (47-159)||(25059880-25059992)
chr3 (66-209)||(50954233-50954376)
[»] chr1 (24 HSPs)
chr1 (11-229)||(26466173-26466391)
chr1 (1-228)||(32106536-32106760)
chr1 (13-229)||(25231243-25231458)
chr1 (2-229)||(7980106-7980333)
chr1 (2-229)||(50116657-50116884)
chr1 (11-229)||(16246657-16246872)
chr1 (13-229)||(38691844-38692060)
chr1 (2-229)||(21943258-21943485)
chr1 (2-229)||(37015854-37016081)
chr1 (2-229)||(46974104-46974331)
chr1 (2-211)||(51663216-51663425)
chr1 (11-209)||(29355591-29355789)
chr1 (11-209)||(41454797-41454995)
chr1 (11-120)||(5078984-5079093)
chr1 (11-209)||(20350416-20350614)
chr1 (11-209)||(44620006-44620204)
chr1 (2-158)||(13174792-13174948)
chr1 (11-209)||(3947364-3947562)
chr1 (11-209)||(3984073-3984271)
chr1 (11-209)||(13630376-13630574)
chr1 (11-209)||(38775018-38775216)
chr1 (11-209)||(44466542-44466740)
chr1 (24-104)||(39914002-39914082)
chr1 (13-229)||(12649484-12649698)
[»] chr5 (19 HSPs)
chr5 (1-213)||(20285965-20286177)
chr5 (11-195)||(23028463-23028654)
chr5 (52-204)||(13157978-13158130)
chr5 (28-229)||(20286448-20286650)
chr5 (2-211)||(18537230-18537439)
chr5 (11-120)||(7020783-7020892)
chr5 (13-229)||(25896006-25896222)
chr5 (11-229)||(27866748-27866966)
chr5 (11-229)||(34078720-34078938)
chr5 (17-229)||(1035459-1035671)
chr5 (13-229)||(7799911-7800127)
chr5 (11-183)||(13567005-13567177)
chr5 (2-158)||(4202833-4202989)
chr5 (11-209)||(11032355-11032553)
chr5 (11-209)||(37819780-37819978)
chr5 (11-209)||(38859093-38859291)
chr5 (11-104)||(28885311-28885404)
chr5 (2-96)||(1036424-1036518)
chr5 (11-95)||(25048472-25048556)
[»] chr4 (16 HSPs)
chr4 (11-192)||(6182653-6182834)
chr4 (11-229)||(18580231-18580449)
chr4 (2-211)||(4976713-4976922)
chr4 (11-209)||(9890982-9891180)
chr4 (2-211)||(4978848-4979057)
chr4 (2-158)||(11502517-11502673)
chr4 (13-112)||(19072562-19072661)
chr4 (14-229)||(21471734-21471949)
chr4 (11-120)||(3404839-3404948)
chr4 (11-120)||(41024248-41024357)
chr4 (2-211)||(51643392-51643603)
chr4 (11-209)||(49565367-49565565)
chr4 (24-121)||(4769178-4769275)
chr4 (12-92)||(38463741-38463821)
chr4 (136-229)||(17140529-17140622)
chr4 (136-229)||(38463825-38463918)
[»] chr2 (24 HSPs)
chr2 (1-212)||(17997065-17997276)
chr2 (2-229)||(41007874-41008101)
chr2 (13-229)||(12907397-12907613)
chr2 (2-229)||(436251-436478)
chr2 (10-229)||(11692716-11692935)
chr2 (2-229)||(43949176-43949403)
chr2 (11-209)||(7263992-7264190)
chr2 (11-229)||(28354805-28355023)
chr2 (11-120)||(3802469-3802578)
chr2 (11-120)||(27275263-27275372)
chr2 (2-229)||(24750598-24750825)
chr2 (2-211)||(24604983-24605192)
chr2 (11-209)||(212344-212542)
chr2 (2-120)||(9655205-9655323)
chr2 (11-209)||(10623357-10623555)
chr2 (2-120)||(34920676-34920794)
chr2 (11-120)||(5348216-5348325)
chr2 (11-120)||(41561061-41561170)
chr2 (11-120)||(45476407-45476516)
chr2 (11-209)||(39794930-39795128)
chr2 (11-209)||(38946723-38946921)
chr2 (67-229)||(1100042-1100204)
chr2 (138-229)||(34920802-34920893)
chr2 (2-70)||(1098720-1098788)
[»] chr8 (15 HSPs)
chr8 (2-229)||(7168840-7169067)
chr8 (2-211)||(35965639-35965848)
chr8 (2-229)||(39751922-39752149)
chr8 (11-229)||(45455316-45455534)
chr8 (2-229)||(43689065-43689292)
chr8 (2-211)||(43370725-43370934)
chr8 (24-158)||(22580914-22581048)
chr8 (24-229)||(14401688-14401895)
chr8 (11-209)||(7341039-7341237)
chr8 (11-209)||(8422759-8422957)
chr8 (11-209)||(30304513-30304711)
chr8 (11-209)||(32377811-32378009)
chr8 (11-209)||(32431768-32431966)
chr8 (11-120)||(1115821-1115930)
chr8 (66-188)||(2145948-2146070)
[»] chr7 (15 HSPs)
chr7 (2-228)||(8400527-8400753)
chr7 (2-228)||(43827500-43827726)
chr7 (2-229)||(47061823-47062050)
chr7 (11-209)||(18106348-18106546)
chr7 (25-229)||(21799952-21800156)
chr7 (11-209)||(617652-617850)
chr7 (11-209)||(30787499-30787697)
chr7 (11-209)||(43623038-43623236)
chr7 (11-209)||(45764339-45764537)
chr7 (11-120)||(15060662-15060771)
chr7 (11-209)||(42500367-42500565)
chr7 (24-159)||(20908433-20908568)
chr7 (24-110)||(3761964-3762050)
chr7 (11-95)||(16794516-16794600)
chr7 (11-104)||(8194183-8194276)
[»] scaffold0219 (1 HSPs)
scaffold0219 (2-229)||(17009-17236)
[»] chr6 (12 HSPs)
chr6 (13-229)||(18606936-18607152)
chr6 (11-209)||(28250856-28251054)
chr6 (2-158)||(31147333-31147489)
chr6 (2-188)||(29287842-29288028)
chr6 (13-229)||(24220106-24220324)
chr6 (11-209)||(1611654-1611852)
chr6 (2-120)||(21358241-21358359)
chr6 (2-120)||(23962223-23962341)
chr6 (49-211)||(7362137-7362299)
chr6 (44-159)||(34111598-34111713)
chr6 (136-229)||(35243543-35243636)
chr6 (136-209)||(13387722-13387795)
[»] scaffold0341 (1 HSPs)
scaffold0341 (11-120)||(16260-16369)
[»] scaffold0116 (1 HSPs)
scaffold0116 (2-229)||(12202-12429)
[»] scaffold0494 (1 HSPs)
scaffold0494 (11-209)||(1841-2039)
[»] scaffold0101 (1 HSPs)
scaffold0101 (11-209)||(33769-33967)
[»] scaffold0340 (1 HSPs)
scaffold0340 (49-229)||(111-291)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 33399702 - 33399475
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33399702 gtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacgtacaagcttcttgccatcctcctttaatctacccgc 33399603  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  33399602 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgcttgcctactaagatatccacga 33399503  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    ||||||||||||||||||||| ||||||    
T  33399502 accatgaacatacacctacattttcttg 33399475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 14399722 - 14399496
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| |||||| |||||||||||| ||    
T  14399722 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcatccttctttaatctaccggc 14399623  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||  | ||||||||||||||||| ||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  14399622 aagaatgtgtccttctaaagccggctccatggcatggttgtgaactccatttagaatgttcaatccccattcctttgtttgcttactttgatatccacta 14399523  T
Q  202 accatgaacatacacctacatattctt 228  Q
    | |||||||| ||||| |||| |||||    
T  14399522 atcatgaacaaacacccacattttctt 14399496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 46992149 - 46992367
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| ||||| |||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  46992149 tcttcaaatgtatcaaaaaatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 46992248  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 210  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  46992249 tccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 46992348  T
Q  211 atacacctacatattcttg 229  Q
    |  |||| |||| ||||||    
T  46992349 aagcacccacattttcttg 46992367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 7841909 - 7842136
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||  ||    
T  7841909 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctacaggc 7842008  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| |    
T  7842009 aagaatgtgtccttctaaagccggcttcatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccacta 7842108  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  7842109 atcatgaacaagcacccacattttcttg 7842136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 36816410 - 36816619
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||    
T  36816410 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 36816509  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  36816510 aagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 36816609  T
Q  202 accatgaaca 211  Q
    | ||||||||    
T  36816610 atcatgaaca 36816619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 48249772 - 48249988
Alignment:
Q  13 ttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 112  Q
    |||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||  ||||||| | ||||||||||||||||| ||||| |||||||    
T  48249772 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacagtcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 48249871  T
Q  113 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 212  Q
     || ||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||     
T  48249872 cttataaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaa 48249971  T
Q  213 acacctacatattcttg 229  Q
     |||| |||| ||||||    
T  48249972 gcacccacattttcttg 48249988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 21955132 - 21955359
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||    
T  21955132 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 21955231  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||  ||||||| ||||| |    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| |    
T  21955232 aataatgtgtccttctagagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttacttactttgatatccacta 21955331  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  21955332 atcatgaacaagcacccacattttcttg 21955359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 29930535 - 29930308
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||| | ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||||||||  |    
T  29930535 gtcttttgttcttcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccgcc 29930436  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    |   |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  29930435 aagaatgtgtccttctaaagccggcatcatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 29930336  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  29930335 atcatgaacaagcacccacattttcttg 29930308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 29979689 - 29979462
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||| | ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||||||||  |    
T  29979689 gtcttttgttcttcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccgcc 29979590  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    |   |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  29979589 aagaatgtgtccttctaaagccggcatcatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 29979490  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  29979489 atcatgaacaagcacccacattttcttg 29979462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 13746624 - 13746822
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  13746624 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 13746723  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  13746724 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 13746822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 77923 - 78123
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | || |||||||||||||| ||||  |||||    
T  77923 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggcaataatgtg 78022  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 210  Q
    || |||||||    | | ||||   ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  78023 tccttctaaagccggctccatcaaatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 78122  T
Q  211 a 211  Q
    |    
T  78123 a 78123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 9428736 - 9428934
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  9428736 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 9428835  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  9428836 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 9428934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 30946545 - 30946743
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||| |||||    
T  30946545 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcatcctcctttaatctaccggcaagaatgtg 30946644  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30946645 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30946743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 7838763 - 7838554
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| |||||||||     |||||||||||||||| ||||| ||||||| | |||||||||| |||||| |     
T  7838763 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatattgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccgga 7838664  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||| ||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  7838663 aagaatgtgtccttctaaagccggctccatcgcatggttgtgaactccactaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 7838564  T
Q  202 accatgaaca 211  Q
    | ||||||||    
T  7838563 atcatgaaca 7838554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 6504849 - 6505076
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| |||||| || |    ||||||||||||||  ||||| ||||||  | |||||||||| |||||| ||    
T  6504849 gtcttttgttcttcaaatgtatcaaaatatttcttggaaacatcttgttcttggtcaagtcatgtacaatcttcttttcgtcctcctttagtctaccggc 6504948  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  6504949 aagaatgtgtcattctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 6505048  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  6505049 atcatgaacaagcacccacattttcttg 6505076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 3949901 - 3949703
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  3949901 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3949802  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3949801 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3949703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 6742045 - 6741847
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  6742045 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 6741946  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  6741945 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 6741847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 8159886 - 8160084
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  8159886 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 8159985  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8159986 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8160084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 16445778 - 16445580
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| | ||| |||||    
T  16445778 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggaaagaatgtg 16445679  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  16445678 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 16445580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 25059880 - 25059992
Alignment:
Q  47 aactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaac 146  Q
    ||||||||||||||||||||| || || |||| | |||| | |||||||  ||||||| ||||| | | |||||  | || ||||||  |||||||||||    
T  25059880 aactcttggtcaagtcacatataatctccttgtcgtccttcattaatctttccgcaagaatgtgccctgctaaatatggtaacatcttatggttgtgaac 25059979  T
Q  147 tccattaagaata 159  Q
     ||||||||||||    
T  25059980 accattaagaata 25059992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 50954376 - 50954233
Alignment:
Q  66 tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaat 165  Q
    ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||    
T  50954376 tacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaat 50954277  T
Q  166 ctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    | | | || ||||||||| ||||  ||||| ||| || ||||||    
T  50954276 ccccattcctttgtttgcttactttgatatccactaatcatgaa 50954233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 26466173 - 26466391
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||||| ||||||||||||| |||||||||||  | ||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||    
T  26466173 tcttcaaatttaacaaaatatttcttggaagcaccttagtcttggtcaagtcacgtacaatcttcttatcatcctcctttaatctacccgcaagcatgtg 26466272  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 210  Q
    || |||||||    | | |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  26466273 tcattctaaagccggctccatctcatggttgtgaactccattaagaatgtttaatctccaatcatttgtttgcctactaagatatccacgaacaatgaac 26466372  T
Q  211 atacacctacatattcttg 229  Q
    |||||||||||| ||||||    
T  26466373 atacacctacattttcttg 26466391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 32106536 - 32106760
Alignment:
Q  1 tgtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccg 100  Q
    |||||| || ||||||||| ||||||  ||||||||  |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |    
T  32106536 tgtcttttgctcttcaaatttaacaac-tattttttcaaagcaccaaactcttggtcaagtcacatacaagctttttgtcattctcctttaatctaccag 32106634  T
Q  101 caagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacg 200  Q
    ||| |||||||| |||||||||| | | |||||| || ||||||||||  ||||||||||| |||||| |||||||||||| ||| ||||||||| ||||    
T  32106635 caatcatgtgtccttctaaacttggctccatctcatgattgtgaactc--ttaagaatattcaatctccaatcatttgtttaccttctaagatatccacg 32106732  T
Q  201 aaccatgaacatacacctacatattctt 228  Q
    |||||||||||| |||| |||| |||||    
T  32106733 aaccatgaacattcacccacattttctt 32106760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 25231458 - 25231243
Alignment:
Q  13 ttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 112  Q
    ||||||| ||||||||||||| ||  |||||||||||  ||||||||||||| ||||| |||||||  ||||||| || ||||||| |||||||||||||    
T  25231458 ttcaaatttaacaaaatatttgttaaaagcaccaaacatttggtcaagtcacgtacaatcttcttggtatcctcccttgatctacctgcaagcatgtgtc 25231359  T
Q  113 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 212  Q
     ||| |||||| | | | ||||  |||||||||||||||| | |||||| |||||| | |||||||||| |||||||| |||| || |||  ||| ||||    
T  25231358 cttccaaacttggcttcgtctcacggttgtgaactccattgaaaatattcaatctccagtcatttgtttccctactaatatatccaggaagaatg-acat 25231260  T
Q  213 acacctacatattcttg 229  Q
    ||||| |||| ||||||    
T  25231259 acacccacattttcttg 25231243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 7980106 - 7980333
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||    
T  7980106 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcatcctcctttaatctaccggc 7980205  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||      | |||  | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  7980206 aagaatgtgtccttctaaagccgactgcattgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 7980305  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | |||||||| ||||| |||| ||||||    
T  7980306 atcatgaacaaacacccacattttcttg 7980333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 50116657 - 50116884
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| | ||||||||||||||||||  |||| ||||||| | ||||||||||||||||| ||    
T  50116657 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatctaactcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccggc 50116756  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||| | |||| |||||||||||||||||| || |||||| | || ||| ||||| ||||  ||||| ||| |    
T  50116757 aagaatgtgtccttctaaagccggctccatcgcatggtagtgaactccattaagaatgttcaatctccattcctttatttgcttactttgatatccacta 50116856  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  50116857 atcatgaacaagcacccacattttcttg 50116884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 16246657 - 16246872
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||||| |||||||||||| || ||| |||||   || ||||| ||||||| ||||| ||||||| ||||||| ||||||||||| | |||||||||    
T  16246657 tcttcaaatttaacaaaatattctt-ggatgcaccttgcttttggt-aagtcacgtacaatcttcttgtcatcctcttttaatctaccggtaagcatgtg 16246754  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 210  Q
    || ||||||| |  | | |||| | |||||||||||| |||||| ||| || |||||| | ||||||||||||||||  |||||||||| ||||||||||    
T  16246755 tccttctaaagtcggctccatcgcatggttgtgaacttcattaacaat-ttcaatctccattcatttgtttgcctacacagatattcactaaccatgaac 16246853  T
Q  211 atacacctacatattcttg 229  Q
    ||||||| |||| ||||||    
T  16246854 atacacccacattttcttg 16246872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 38691844 - 38692060
Alignment:
Q  13 ttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 112  Q
    |||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| ||||| | |||||    
T  38691844 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggcaagaacgtgtc 38691943  T
Q  113 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 212  Q
     ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||     
T  38691944 cttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaa 38692043  T
Q  213 acacctacatattcttg 229  Q
    ||||| |||| ||||||    
T  38692044 acacccacattttcttg 38692060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 21943258 - 21943485
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| |     
T  21943258 gtcttttgttcttcaaatttatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggt 21943357  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| ||||||||   | | |||| | ||||||||||||||||| ||||| || |||| | | || ||||||||||||||  ||||| ||| |    
T  21943358 aagaatgtgtccttctaaacccggctccatcccatggttgtgaactccattgagaatgttcaatccccattcctttgtttgcctactttgatatccacta 21943457  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    ||||| ||||  |||| |||| ||||||    
T  21943458 accataaacaagcacccacattttcttg 21943485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 37016081 - 37015854
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   ||||||||||||||||  |||| ||||||| | ||||||||||||||||| ||    
T  37016081 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgcacaatcttcttgtcgtcctcctttaatctaccggc 37015982  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  37015981 aagaatgtgtccttctaaagccagctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 37015882  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  37015881 atcatgaacaagcacccacattttcttg 37015854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 46974331 - 46974104
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||| ||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| ||    
T  46974331 gtcttttgttctttaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatgtaccggc 46974232  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| ||||||| |  | | |||| | ||||||| ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  46974231 aagaatgtgtccttctaaagtcggctccatcgcatggttgtaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 46974132  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | |||||||| ||||| |||| ||||||    
T  46974131 atcatgaacaaacacccacattttcttg 46974104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 51663425 - 51663216
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||| | ||||| ||||||| | ||||||||||||||||| ||    
T  51663425 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcgcgtacaatcttcttgtcctcctcctttaatctaccagc 51663326  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||| | ||||||||| ||||||||||||| || |||| | | || ||||||||| ||||  ||||||||| |    
T  51663325 aagaatgtgtcattctaaagccggcttcatcgcatggttgtgagctccattaagaatgttcaatccccattcttttgtttgcttactttgatattcacta 51663226  T
Q  202 accatgaaca 211  Q
    | ||||||||    
T  51663225 atcatgaaca 51663216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 29355591 - 29355789
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  29355591 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 29355690  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  29355691 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 29355789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 41454995 - 41454797
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  41454995 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 41454896  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  41454895 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 41454797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 5079093 - 5078984
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||||||||  ||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||| |||||    
T  5079093 tcttcaaatgtattaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgccgtcctcctttaatctaccggcaagaatgtg 5078994  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  5078993 tccttctaaa 5078984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 20350614 - 20350416
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  20350614 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 20350515  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  20350514 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 20350416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 44620006 - 44620204
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  44620006 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 44620105  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  44620106 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 44620204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 13174948 - 13174792
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   ||||||||||||||||  |||| ||||||| | ||||||||||||||||| ||    
T  13174948 gtcttttgttcttcaaatgtatcaaaatatttattggaagcatcttgctcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccagc 13174849  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaat 158  Q
     || ||||||| | |||||    | | |||| | |||||||||||||||||||||||    
T  13174848 gagaatgtgtcctcctaaagccggctccatcgcatggttgtgaactccattaagaat 13174792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 3947364 - 3947562
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  3947364 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3947463  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3947464 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3947562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 3984271 - 3984073
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  3984271 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3984172  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3984171 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3984073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 13630574 - 13630376
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| | ||| |||||    
T  13630574 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggaaagaatgtg 13630475  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  13630474 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 13630376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 38775018 - 38775216
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  38775018 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 38775117  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38775118 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38775216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 44466740 - 44466542
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  44466740 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 44466641  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  44466640 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 44466542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 39914082 - 39914002
Alignment:
Q  24 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 104  Q
    ||||||||||||| |  |||||||||||||||||||||||| ||||| ||||||| |||||| | ||||||| | ||||||    
T  39914082 caaaatatttttttgttgcaccaaactcttggtcaagtcacgtacaatcttcttgtcatccttcattaatcttctcgcaag 39914002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 12649484 - 12649698
Alignment:
Q  13 ttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 112  Q
    |||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | | |||  ||||| |||| ||||| |||||||    
T  12649484 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtgctc--ttaatttaccggcaagaatgtgtc 12649581  T
Q  113 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 212  Q
     |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||  ||| || ||||||||     
T  12649582 cttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatacccactaatcatgaacaa 12649681  T
Q  213 acacctacatattcttg 229  Q
     |||| |||| ||||||    
T  12649682 gcacccacattttcttg 12649698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 20286177 - 20285965
Alignment:
Q  1 tgtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccg 100  Q
    |||||| || ||||||||| ||||||||||||| |||||||||||  ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  20286177 tgtcttttgctcttcaaatttaacaaaatatttcttggaagcaccttactcttggttaagtcacatacaatcttcttgtcatcctcctttaatctacccg 20286078  T
Q  101 caagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacg 200  Q
    |||||||||||| |||||||    | | |||| | ||||||||||||||||||||||| || | | || | |||||||||||||||||||||||| |||     
T  20286077 caagcatgtgtccttctaaagccggctccatcacatggttgtgaactccattaagaatgttcagtttccattcatttgtttgcctactaagatatccact 20285978  T
Q  201 aaccatgaacata 213  Q
     ||||||||||||    
T  20285977 taccatgaacata 20285965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 23028463 - 23028654
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcaca-------tacaagcttcttgccatcctcctttaatctacccgcaa 103  Q
    ||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||        ||||| ||||||| |||||||| |||||||||||||||    
T  23028463 tcttcaaatttaataaaatattttttgaaagcatcaaactcttggtcaagtcaccaatcatgtacaatcttcttgtcatcctcccttaatctacccgcaa 23028562  T
Q  104 gcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatat 195  Q
    ||||||||  ||||||||||   | |||||| ||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||    
T  23028563 gcatgtgttcttctaaacttgccttcatctcatggttgtgaactccattaataatattcaatctccaatcatttgtttccctactaagatat 23028654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 52 - 204
Target Start/End: Original strand, 13157978 - 13158130
Alignment:
Q  52 ttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccat 151  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| || |||| ||   | ||| || ||||||||||||||||    
T  13157978 ttggtgaagtcacatacaagtttcttgtcatcctcctttaatctacccgcaagcatgcgtccttttaaatttgactccatttcatggttgtgaactccat 13158077  T
Q  152 taagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaacc 204  Q
    ||||||| || |||||| |||||||||||||| || |||||||| ||||||||    
T  13158078 taagaatgttcaatctccaatcatttgtttgcttattaagatatccacgaacc 13158130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 229
Target Start/End: Complemental strand, 20286650 - 20286448
Alignment:
Q  28 atattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgtt 127  Q
    |||||| ||||| |||||  ||||||||||||||||  ||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||||    | |    
T  20286650 atatttcttggatgcaccttactcttggtcaagtcatgtacaatctttttgtcatcctcctttaatctacccgcaagcatgtgtccttctaaagccggct 20286551  T
Q  128 acatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac-gaaccatgaacatacacctacatattc 226  Q
     |||| | ||||||| ||||||||||||||| || |   || | |||||||||||||||||||||||| |||  | ||||||||||||||| |||| |||    
T  20286550 ccatcacatggttgtaaactccattaagaatgttcaggttccattcatttgtttgcctactaagatatccacttacccatgaacatacacccacattttc 20286451  T
Q  227 ttg 229  Q
    |||    
T  20286450 ttg 20286448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 18537230 - 18537439
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |  ||||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||    
T  18537230 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatctcactcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 18537329  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||  | | |  ||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| |    
T  18537330 aagaatgtgtccttctaaagctggctcaatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgttttcttactttgatatccacta 18537429  T
Q  202 accatgaaca 211  Q
    | ||||||||    
T  18537430 atcatgaaca 18537439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 7020783 - 7020892
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  7020783 tcttcaaatgtatcaaaatatttcttggaagcatcttcctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 7020882  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  7020883 tccttctaaa 7020892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 25896006 - 25896222
Alignment:
Q  13 ttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 112  Q
    |||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||    
T  25896006 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 25896105  T
Q  113 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 212  Q
     |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||     
T  25896106 cttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaa 25896205  T
Q  213 acacctacatattcttg 229  Q
     |||| |||| ||||||    
T  25896206 gcacccacattttcttg 25896222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 27866748 - 27866966
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  27866748 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 27866847  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 210  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || |||||||    
T  27866848 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaac 27866947  T
Q  211 atacacctacatattcttg 229  Q
    |  |||| |||| ||||||    
T  27866948 aagcacccacattttcttg 27866966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 34078938 - 34078720
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  34078938 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 34078839  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 210  Q
    || |||||||    | | |||    ||||| ||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  34078838 tccttctaaagccggctccatgggatggttttgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 34078739  T
Q  211 atacacctacatattcttg 229  Q
    |  |||| |||| ||||||    
T  34078738 aagcacccacattttcttg 34078720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 1035459 - 1035671
Alignment:
Q  17 aatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttc 116  Q
    |||||| |||||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | ||||||||||||||||| ||||| ||||||| |||    
T  1035459 aatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatctaccggcaagaatgtgtccttc 1035558  T
Q  117 taaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacac 216  Q
    ||||    | | |||  | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||    
T  1035559 taaagccggctccatggcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcac 1035658  T
Q  217 ctacatattcttg 229  Q
    | |||| ||||||    
T  1035659 ccacattttcttg 1035671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 7799911 - 7800127
Alignment:
Q  13 ttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 112  Q
    |||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| ||||||  |||| |||||||    
T  7799911 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccgacaagaatgtgtc 7800010  T
Q  113 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 212  Q
     |||||||    | | |||| | ||||||||||||||||||||||| || |||  | | || ||||||||| ||||  ||||| ||| || ||||||||     
T  7800011 cttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaattcccattcctttgtttgcttactttgatatccactaatcatgaacaa 7800110  T
Q  213 acacctacatattcttg 229  Q
     |||| |||| ||||||    
T  7800111 gcacccacattttcttg 7800127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 13567005 - 13567177
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||| |||||||||||| ||||| |||||    
T  13567005 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtccttctttaatctaccggcaagaatgtg 13567104  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgc 183  Q
    || |||||||  | | | |||    ||||||||||||||||||||||| || |||| | | || |||||||||    
T  13567105 tccttctaaagctggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgc 13567177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 4202833 - 4202989
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||  ||||||||| |   |||||| ||||||||| ||||| ||||||| | ||||||||||||||||| ||    
T  4202833 gtcttttgttcttcaaatgtatcaaaatattacttggaagcatcttgctcttgatcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 4202932  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaat 158  Q
    |||  |||||| |||||||    | | |||| | |||||||||||||||||||||||    
T  4202933 aagagtgtgtccttctaaagccggctccatcgcatggttgtgaactccattaagaat 4202989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 11032355 - 11032553
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   || || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  11032355 tcttcaaatgtatcaaaatatttcttggaagcatcttgctttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 11032454  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  11032455 tcattctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcttttgtttgcttactttgatatccactaatcatgaa 11032553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 37819780 - 37819978
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||  |||||    
T  37819780 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaacaatgtg 37819879  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  37819880 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 37819978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 38859093 - 38859291
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |    | || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  38859093 tcttcaaatgtatcaaaatatttcttggaagcatcttgttttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 38859192  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  38859193 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatctccattcttttgtttgcttactttgatatccactaatcatgaa 38859291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 28885311 - 28885404
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 104  Q
    |||||||||||| |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| |||||    
T  28885311 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaag 28885404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 1036518 - 1036424
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatcta 96  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | |||||||||||||||    
T  1036518 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatcta 1036424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 25048556 - 25048472
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatct 95  Q
    ||||||||| || ||||||||||| |||   || | |||| |||||||||||| |||||| ||||||| | |||||| |||||||    
T  25048556 tcttcaaatttatcaaaatattttatggtttcaacgaactattggtcaagtcatatacaatcttcttgtcgtcctccattaatct 25048472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 6182834 - 6182653
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||| |||| ||||||||||||||||| |||||||||||||||||||||||||  |||||  |||||| || | ||| ||||| |||  |||||||| ||    
T  6182834 tcttaaaatttaacaaaatattttttgaaagcaccaaactcttggtcaagtcatgtacaattttcttgtcaccatcccttaatatacttgcaagcatatg 6182735  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaaga 192  Q
    || |||||||||| | | |||||| |||||||||||||||| ||||||||| |||||| |||| ||||||| ||||||||||    
T  6182734 tccttctaaacttggcttcatctcatggttgtgaactccatcaagaatattcaatctccaatcgtttgtttccctactaaga 6182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 18580231 - 18580449
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||||||||| ||||||| | ||||||||||||||| | ||||| |||||    
T  18580231 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 18580330  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 210  Q
    || |||||||    | | |||  | ||||||||||||||||||||||| |||||||   | || ||||||||| ||||  ||||| ||| || |||||||    
T  18580331 tcattctaaagccggcttcattgcatggttgtgaactccattaagaatgtttaatcctcattcctttgtttgcttactttgatatccactaatcatgaac 18580430  T
Q  211 atacacctacatattcttg 229  Q
    |  |||| |||| ||||||    
T  18580431 aagcacccacattttcttg 18580449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 4976922 - 4976713
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||    
T  4976922 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggc 4976823  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| |||||||||||||||    | | |||| | ||||||  ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  4976822 aagaatgtgtctttctaaagccggctccatcgcatggttgcaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 4976723  T
Q  202 accatgaaca 211  Q
    | ||||||||    
T  4976722 atcatgaaca 4976713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 9891180 - 9890982
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  9891180 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 9891081  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  9891080 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 9890982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 4978848 - 4979057
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | || ||||||| ||| |  ||    
T  4978848 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcatcctttagtctgctggc 4978947  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| ||||||| |  | | |||| | |||||| |||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  4978948 aagaatgtgtccttctaaagtcggctccatcgcatggttgggaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 4979047  T
Q  202 accatgaaca 211  Q
    | ||||||||    
T  4979048 atcatgaaca 4979057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 11502673 - 11502517
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | || |||||||||||||| ||    
T  11502673 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggc 11502574  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaat 158  Q
    | | ||||||| |||||||    | | |||| | ||| |||||||||||||||||||    
T  11502573 atgaatgtgtccttctaaagccggctccatcgcatgggtgtgaactccattaagaat 11502517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 19072562 - 19072661
Alignment:
Q  13 ttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 112  Q
    |||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||    
T  19072562 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 19072661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 21471949 - 21471734
Alignment:
Q  14 tcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 113  Q
    ||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||| |  |||| ||||||||    
T  21471949 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttattctatcttcaagaatgtgtct 21471850  T
Q  114 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacata 213  Q
    || |||| ||   | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||      
T  21471849 ttttaaagttgtctccattgtatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaag 21471750  T
Q  214 cacctacatattcttg 229  Q
    |||| |||| ||||||    
T  21471749 cacccacattttcttg 21471734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 3404948 - 3404839
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||  ||||| |||||    
T  3404948 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctactggcaagaatgtg 3404849  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  3404848 tccttctaaa 3404839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 41024357 - 41024248
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||  | ||||||||||||||||| ||||| |||||    
T  41024357 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttttcgtcctcctttaatctacctgcaagaatgtg 41024258  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  41024257 tccttctaaa 41024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 51643392 - 51643603
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||||||| |||||     |||||||||||||||| ||||| ||||||| | ||||||||||||||||  ||    
T  51643392 gtcttttgttcttcaaatgtatcaaaatattttttgaaagcattttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctactggc 51643491  T
Q  102 aagcatgtgtctttctaaa-cttcgttacatctcttggttgtg-aactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac 199  Q
    ||| ||||||| || |||| |   | | |||| | || ||||| ||||||||||||||| || |||||| | || ||||||||| ||||  ||||| |||    
T  51643492 aagaatgtgtccttataaagccgggctccatcgcatgtttgtgaaactccattaagaatgttcaatctcaattcctttgtttgcttactttgatatccac 51643591  T
Q  200 gaaccatgaaca 211  Q
     || ||||||||    
T  51643592 taatcatgaaca 51643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 49565367 - 49565565
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||| | ||||| |||||    
T  49565367 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 49565466  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  49565467 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 49565565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 4769275 - 4769178
Alignment:
Q  24 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaac 121  Q
    |||||||||| ||| ||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| | ||| ||||||| ||||||||    
T  4769275 caaaatatttcttgaaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggtaagaatgtgtccttctaaac 4769178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 38463741 - 38463821
Alignment:
Q  12 cttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaa 92  Q
    ||||||||||| |||||||||||||||||||| |   |||||||||||||||| | ||| ||||||| | |||||||||||    
T  38463741 cttcaaatgtatcaaaatattttttggaagcatcttgctcttggtcaagtcacgtgcaatcttcttgtcgtcctcctttaa 38463821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 17140622 - 17140529
Alignment:
Q  136 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattcttg 229  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| ||||||||||| ||| | |||| ||||||    
T  17140622 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcctactttgatatccactaaccatgaacaaacatccacattttcttg 17140529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 38463825 - 38463918
Alignment:
Q  136 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattcttg 229  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| ||||||    
T  38463825 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttcttg 38463918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 17997065 - 17997276
Alignment:
Q  1 tgtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccg 100  Q
    |||||| || ||||||||| || |||||||||| |||||||||||   |||||||||||||||| ||||| ||||||  ||||||||||||||||||| |    
T  17997065 tgtcttttgctcttcaaatttatcaaaatatttcttggaagcaccttgctcttggtcaagtcacgtacaatcttcttatcatcctcctttaatctaccag 17997164  T
Q  101 caagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacg 200  Q
    |||||||||||| |||||||    | | |||| | |||||| ||||| ||| |||||| || |||||| | || |||||||| |||||||||||| |||     
T  17997165 caagcatgtgtccttctaaagccggctccatcgcatggttgcgaacttcatgaagaatgttcaatctccattcctttgtttgtctactaagatatccact 17997264  T
Q  201 aaccatgaacat 212  Q
    |||| |||||||    
T  17997265 aaccttgaacat 17997276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 41007874 - 41008101
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||    
T  41007874 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 41007973  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | |||||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| |    
T  41007974 aagaatgtgtcattctaaagccggctacatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccacta 41008073  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  41008074 atcatgaacaagcacccacattttcttg 41008101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 12907397 - 12907613
Alignment:
Q  13 ttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 112  Q
    |||||||||| || ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||    
T  12907397 ttcaaatgtatcagaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 12907496  T
Q  113 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 212  Q
     |||||||    | | |||| | ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||     
T  12907497 cttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaacaa 12907596  T
Q  213 acacctacatattcttg 229  Q
     |||| |||| ||||||    
T  12907597 gcacccacattttcttg 12907613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 436478 - 436251
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||    
T  436478 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 436379  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||  ||| |    
T  436378 aagaatgtgtccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgataaccacta 436279  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  436278 atcatgaacaagcacccacattttcttg 436251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 11692716 - 11692935
Alignment:
Q  10 gtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgt 109  Q
    ||||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||    
T  11692716 gtcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgt 11692815  T
Q  110 gtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    ||| ||||||| |  | |  ||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||    
T  11692816 gtccttctaaagtcggctcgatcacatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaa 11692915  T
Q  210 catacacctacatattcttg 229  Q
    ||  |||| |||| ||||||    
T  11692916 caagcacccacattttcttg 11692935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 43949176 - 43949403
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||  ||||| ||||||||| ||||||||||||||||| ||    
T  43949176 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgccgtcctcctttaatctaccggc 43949275  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | | || | ||||||||||||||||||| ||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  43949276 aagaatgtgtccttctaaagccggctccttcgcatggttgtgaactccattaataatgttcaatccccattcctttgtttgcttactttgatatccacta 43949375  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  43949376 atcatgaacaagcacccacattttcttg 43949403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 7264190 - 7263992
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| |||||| || |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  7264190 tcttcaaatgtatcaaaatatttcttggaaccatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 7264091  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    ||| |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  7264090 tccttctaaagccggttccatgagatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 7263992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 28354805 - 28355023
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   ||| |||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||    
T  28354805 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcatggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccagcaagaatgtg 28354904  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 210  Q
    || |||||||    | | |||| | ||||| ||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  28354905 tcattctaaagcaggctccatcgcatggttatgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 28355004  T
Q  211 atacacctacatattcttg 229  Q
    |  |||| |||| ||||||    
T  28355005 aagcacccacattttcttg 28355023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 3802469 - 3802578
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  3802469 tcttcaaatgtatcaaaatatttattggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3802568  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  3802569 tccttctaaa 3802578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 27275263 - 27275372
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  27275263 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 27275362  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  27275363 tccttctaaa 27275372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 24750825 - 24750598
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||| |||||| |||  ||||| ||||||| ||||||||||||||||||| ||    
T  24750825 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctctcggtcaattcatgtacaatcttcttgtcatcctcctttaatctaccggc 24750726  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  24750725 aagaatgtgtccttctaaatccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 24750626  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  24750625 atcatgaacaagcacccacattttcttg 24750598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 24604983 - 24605192
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | |||||||||| ||||||  |    
T  24604983 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaattttcttgtcgtcctcctttagtctaccgac 24605082  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||  |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  24605083 aagaatgtgtacttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 24605182  T
Q  202 accatgaaca 211  Q
    | ||||||||    
T  24605183 atcatgaaca 24605192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 212344 - 212542
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  212344 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 212443  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  212444 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 212542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 9655323 - 9655205
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||| ||||||| ||||| ||||||| | |||||||||| |||||| ||    
T  9655323 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggttaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggc 9655224  T
Q  102 aagcatgtgtctttctaaa 120  Q
    ||| ||||||| |||||||    
T  9655223 aagaatgtgtccttctaaa 9655205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 10623357 - 10623555
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  10623357 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 10623456  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  10623457 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 10623555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 34920676 - 34920794
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| |     
T  34920676 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggt 34920775  T
Q  102 aagcatgtgtctttctaaa 120  Q
    ||| ||||||| |||||||    
T  34920776 aagaatgtgtccttctaaa 34920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 5348325 - 5348216
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  5348325 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 5348226  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  5348225 tccttctaaa 5348216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 41561170 - 41561061
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  41561170 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 41561071  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  41561070 tccttctaaa 41561061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 45476516 - 45476407
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||| ||| |||||||||| ||| ||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  45476516 tcttcaaacgtatcaaaatatttcttgtaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 45476417  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  45476416 tccttctaaa 45476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 39795128 - 39794930
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   || || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  39795128 tcttcaaatgtatcaaaatatttcttggaagcatcttgctttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 39795029  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
     | |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  39795028 cccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcttttgtttgcttactttgatatccactaatcatgaa 39794930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 38946921 - 38946723
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| ||||||||||  |||||||| |   |||||||||||||||| ||| | |||||||   ||||||||||||||||| ||||| |||||    
T  38946921 tcttcaagtgtatcaaaatatttcatggaagcatcttgctcttggtcaagtcacgtacgatcttcttgttgtcctcctttaatctaccggcaagaatgtg 38946822  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38946821 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38946723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 229
Target Start/End: Original strand, 1100042 - 1100204
Alignment:
Q  67 acaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatc 166  Q
    |||| ||||||| | ||||||||||||||| | ||||| |||||||  ||||||    | | |||| | ||||||||||||||||||||||| || ||||    
T  1100042 acaatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtccatctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatc 1100141  T
Q  167 tcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattcttg 229  Q
     | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| ||||||    
T  1100142 cccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttcttg 1100204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 34920802 - 34920893
Alignment:
Q  138 gttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattcttg 229  Q
    ||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| ||||||    
T  34920802 gttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttcttg 34920893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 1098720 - 1098788
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaa 70  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||| ||||||||||| |||||    
T  1098720 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctctcggtcaagtcacgtacaa 1098788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 7169067 - 7168840
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| | ||||| | ||||||||||||||||  ||    
T  7169067 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcatcttgtcgtcctcctttaatctactagc 7168968  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| |||| || ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| |    
T  7168967 aagaatgtatccttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccactcctttgtttgcctactttgatatccacta 7168868  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    ||||||||||  |||| |||| ||||||    
T  7168867 accatgaacaagcacccacattttcttg 7168840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 35965639 - 35965848
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||    
T  35965639 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 35965738  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  35965739 aagaatgtgtccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 35965838  T
Q  202 accatgaaca 211  Q
    | ||||||||    
T  35965839 atcatgaaca 35965848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 39751922 - 39752149
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||    
T  39751922 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 39752021  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    |   || |||| |||||||    ||| |||  | ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| |    
T  39752022 ataaatatgtcattctaaagccggttccattgcatggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccacca 39752121  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | |||||||| ||| | |||| ||||||    
T  39752122 atcatgaacaaacatccacattttcttg 39752149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 45455534 - 45455316
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| |||||||||     |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  45455534 tcttcaaatgtatcaaaatatttcttggaagcattttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 45455435  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 210  Q
    || ||||||| |  | | |||| | ||||||| ||||||||||||||| |  |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  45455434 tccttctaaagtcggctccatcgcatggttgttaactccattaagaatgtccaatccccattcctttgtttgcttactttgatatccactaatcatgaac 45455335  T
Q  211 atacacctacatattcttg 229  Q
    |  |||| |||| ||||||    
T  45455334 aagcacccacattttcttg 45455316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 43689065 - 43689292
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| || |||||| |   |||||||||||||||| ||||| ||||||| | ||||| ||||||||||| ||    
T  43689065 gtcttttgttcttcaaatgtatcaaaatatttcttcgaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcttttaatctaccggc 43689164  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||      | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  43689165 aagaatgtgtccttctaaagccgactccatcgcatggttgtgaactccattaagaatgttaaatccccattcctttgtttgcttactttgatatccacta 43689264  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  43689265 atcatgaacaagcacccacattttcttg 43689292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 43370934 - 43370725
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||    
T  43370934 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggc 43370835  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||      | |||| | ||||||||||||||||||||||| || || | | | || ||||||||| ||||  ||||| ||| |    
T  43370834 aagaatgtgtccttctaaagccgactccatcgcatggttgtgaactccattaagaatgttcaaaccccattcctttgtttgcttactttgatatccacta 43370735  T
Q  202 accatgaaca 211  Q
    | ||||||||    
T  43370734 atcatgaaca 43370725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 22581048 - 22580914
Alignment:
Q  24 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 123  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| ||||||| |     
T  22581048 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagtc 22580949  T
Q  124 cgttacatctcttggttgtgaactccattaagaat 158  Q
     | | |||| | ||||||| |||||||||||||||    
T  22580948 ggctccatcgcatggttgtaaactccattaagaat 22580914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 14401688 - 14401895
Alignment:
Q  24 caaaatattttttggaagcaccaaactcttggtcaagtcaca--tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaac 121  Q
    |||||||||||||||  ||||||||||||||||||||||| |  ||||| ||||||| |||| ||| ||||||| || ||||| ||||| | ||||||||    
T  14401688 caaaatattttttggtggcaccaaactcttggtcaagtcatatgtacaatcttcttgtcatcatcccttaatcttcctgcaagaatgtgccattctaaac 14401787  T
Q  122 ttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctaca 221  Q
    || |   ||  || ||||||||||||||||||||||||   ||  || |||| ||||||| |||||||| |||| || | | | |||||| ||||| |||    
T  14401788 ttggcaccaattcatggttgtgaactccattaagaatagccaacttccaatcctttgtttccctactaacatatccatgcaacttgaacacacacccaca 14401887  T
Q  222 tattcttg 229  Q
    | ||||||    
T  14401888 ttttcttg 14401895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 7341237 - 7341039
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  7341237 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 7341138  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  7341137 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 7341039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 8422759 - 8422957
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  8422759 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 8422858  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    | ||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8422859 tcattctaaagccggctccatgggatagttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8422957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 30304513 - 30304711
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  30304513 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 30304612  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30304613 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30304711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 32377811 - 32378009
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  32377811 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 32377910  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32377911 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32378009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 32431768 - 32431966
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  32431768 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 32431867  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32431868 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32431966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 1115930 - 1115821
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  1115930 tcttcaattgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtactatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 1115831  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  1115830 tccttctaaa 1115821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 2145948 - 2146070
Alignment:
Q  66 tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaat 165  Q
    ||||| ||||||| | ||||||||||||||||| ||||| || |||| ||||||| |  | | |||| | ||||||||||||||||||| ||| || |||    
T  2145948 tacaatcttcttgtcgtcctcctttaatctaccggcaagaatatgtccttctaaagtcggctccatcgcatggttgtgaactccattaaaaatgttcaat 2146047  T
Q  166 ctcgaatcatttgtttgcctact 188  Q
    ||| | |||||||||||| ||||    
T  2146048 ctccattcatttgtttgcttact 2146070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 8400753 - 8400527
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || ||||||||| || ||||||||||||||| | || |   |||||||||||||||| ||||| ||||||| |||||||||||||| |||| ||    
T  8400753 gtcttttgttcttcaaatttatcaaaatattttttggtaacatcttgctcttggtcaagtcacctacaatcttcttgtcatcctcctttaatgtaccagc 8400654  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||| | ||| || |||| | | || ||||||||||||||||||||| ||| |    
T  8400653 aagaatgtgtccttctaaagccggctccatcgcatggttgtgaactccattgaaaatgttcaatccccattcttttgtttgcctactaagatatccacta 8400554  T
Q  202 accatgaacatacacctacatattctt 228  Q
    ||||||||||  |||| |||| |||||    
T  8400553 accatgaacaagcacccacattttctt 8400527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 43827500 - 43827726
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || ||||||||| || |||||||||| ||||||||| |   | |||||||||||||| ||||| ||||||  | ||||||||||||||||| |     
T  43827500 gtcttttgttcttcaaatttatcaaaatatttcttggaagcatcttgcacttggtcaagtcacgtacaatcttcttttcgtcctcctttaatctaccggt 43827599  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||  | | | | || | ||||||||||||||||||||||| || |||| | | || |||||||| |||||||||||| ||| |    
T  43827600 aagaatgtgtcattctaaagctggctccttcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgtctactaagatatccacta 43827699  T
Q  202 accatgaacatacacctacatattctt 228  Q
    |||||||||| ||||| |||| |||||    
T  43827700 accatgaacaaacacccacattttctt 43827726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 47062050 - 47061823
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||||||||| ||| ||| | ||||||||||||||||| ||    
T  47062050 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacatacaatctttttgtcgtcctcctttaatctaccggc 47061951  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| ||| ||| |  | | |||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| |    
T  47061950 aagaatgtgtccttcaaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccacta 47061851  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  47061850 atcatgaacaagcacccacattttcttg 47061823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 18106546 - 18106348
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  18106546 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctacctgcaagaatgtg 18106447  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  18106446 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 18106348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 21800156 - 21799952
Alignment:
Q  25 aaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttc 124  Q
    ||||||||||||||| |||||   |||||| | ||||||| || ||  ||||||  ||||||||||||||||||  ||| |||||||| |||||||        
T  21800156 aaaatattttttggatgcaccttgctcttgattaagtcacgtataattttcttgttatcctcctttaatctaccgacaaacatgtgtccttctaaagccg 21800057  T
Q  125 gttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatat 224  Q
      | |||| | ||||||||||||||||||| ||| || |||||| | |  ||||||| ||||||||||||| ||| |||||||||||| |||| |||| |    
T  21800056 actccatcgcatggttgtgaactccattaacaatgttcaatctccattgctttgttttcctactaagatatccactaaccatgaacatgcacccacattt 21799957  T
Q  225 tcttg 229  Q
    |||||    
T  21799956 tcttg 21799952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 617652 - 617850
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  617652 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 617751  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  617752 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 617850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 30787697 - 30787499
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  30787697 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 30787598  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30787597 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30787499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 43623038 - 43623236
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  43623038 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 43623137  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  43623138 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 43623236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 45764537 - 45764339
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  45764537 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 45764438  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  45764437 tcattctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 45764339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 15060771 - 15060662
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||  ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  15060771 tcttcaaatgtatcaaaatattccttggaagcatcttgctctttgtcaagtcacttacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 15060672  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  15060671 tccttctaaa 15060662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 42500565 - 42500367
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||| ||||| |    |||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||     
T  42500565 tcttcaaatgtatcaaaatatttcttgaaagcatcttgatctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtt 42500466  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  42500465 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaa 42500367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 20908433 - 20908568
Alignment:
Q  24 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 123  Q
    ||||||||||||| |  |||||||||||||||| |||||||  |||| ||||||| |||||||| ||||||| || ||||| ||||| | ||||||  ||    
T  20908433 caaaatatttttttgttgcaccaaactcttggtaaagtcacgcacaatcttcttgtcatcctcccttaatcttcctgcaagaatgtgcccttctaacatt 20908532  T
Q  124 cgttacatctcttggttgtgaactccattaagaata 159  Q
         | |||| ||||||||||||||||||||||||    
T  20908533 gccgtcgtctcatggttgtgaactccattaagaata 20908568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 3762050 - 3761964
Alignment:
Q  24 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||||||  ||| ||||||||||||||||| || || || ||| ||| |||| ||| ||||||| ||| ||||||||||    
T  3762050 caaaatattttttggctgcatcaaactcttggtcaagttacctagaatctttttgtcatcttcccttaatcttccctcaagcatgtg 3761964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 16794516 - 16794600
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatct 95  Q
    ||||||||| |  |||||||||||||||   ||||||||| ||||||||||||  ||||| ||||||| | |||||| |||||||    
T  16794516 tcttcaaatttgtcaaaatattttttggtttcaccaaactattggtcaagtcatgtacaatcttcttgtcgtcctccattaatct 16794600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 8194183 - 8194276
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 104  Q
    ||||||||| |  |||||||||||||||   |||| |||| ||| ||||||||  ||||| ||||||| | |||||| ||||||| ||||||||    
T  8194183 tcttcaaatttgtcaaaatattttttggtttcaccgaactattgctcaagtcatgtacaatcttcttgtcgtcctccattaatcttcccgcaag 8194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 17236 - 17009
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||    
T  17236 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacttacaatcttcttgtcgtcctcctttagtctaccggc 17137  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  17136 aagaatgtgtccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccctattcctttgtttgcttactttgatatccacta 17037  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  17036 atcatgaacaagcacccacattttcttg 17009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 18607152 - 18606936
Alignment:
Q  13 ttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 112  Q
    |||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||| |  |||| |||||||    
T  18607152 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcgacaagaatgtgtc 18607053  T
Q  113 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 212  Q
     ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||     
T  18607052 cttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaa 18606953  T
Q  213 acacctacatattcttg 229  Q
     |||| |||| ||||||    
T  18606952 gcacccacattttcttg 18606936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 28251054 - 28250856
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||| | ||||| |||||    
T  28251054 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 28250955  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||  | | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  28250954 tccttctaaagctggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 28250856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 31147489 - 31147333
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || ||||||||||||  ||||||||  ||||||||| |   |||||| ||||||||| ||||| ||||||| ||| ||||||||||||||| ||    
T  31147489 gtcttttgttcttcaaatgtataaaaatattacttggaagcatcttgctcttgatcaagtcacgtacaatcttcttgtcattctcctttaatctaccggc 31147390  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaat 158  Q
    ||| ||||||| ||||||| |  | | |||| | |||||||||||||||||||||||    
T  31147389 aagaatgtgtccttctaaagtcggctccatcgcatggttgtgaactccattaagaat 31147333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 29287842 - 29288028
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||    
T  29287842 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggc 29287941  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 188  Q
    ||| ||||||| || ||||      | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||    
T  29287942 aagaatgtgtccttataaagccgactccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttact 29288028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 24220324 - 24220106
Alignment:
Q  13 ttcaaatgtaacaaaatattttttggaagcaccaaa--ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| || |||||||||| ||||||||| |  |  |||||||||||||||| || ||  |||||| | |||||||||||||||||  |||| |||||    
T  24220324 ttcaaatttatcaaaatatttcttggaagcatcttatgctcttggtcaagtcacgtataattttcttgtcgtcctcctttaatctaccgacaagaatgtg 24220225  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 210  Q
    || |||||||      | |||| | |||||||||||| |||||||||| || |||| | | |||||||||| ||||||||||||| ||| ||||||| ||    
T  24220224 tccttctaaagccgactccatcgcatggttgtgaactgcattaagaattttcaatccccattcatttgttttcctactaagatatccactaaccatggac 24220125  T
Q  211 atacacctacatattcttg 229  Q
    |  |||| |||| ||||||    
T  24220124 aagcacccacattttcttg 24220106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 1611654 - 1611852
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  1611654 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 1611753  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  1611754 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 1611852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 21358241 - 21358359
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||  ||||| ||||||| | ||||||||||||||| | ||    
T  21358241 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggc 21358340  T
Q  102 aagcatgtgtctttctaaa 120  Q
    ||| ||||||| |||||||    
T  21358341 aagaatgtgtccttctaaa 21358359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 23962223 - 23962341
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||  ||||| ||||||| | ||||||||||||||| | ||    
T  23962223 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggc 23962322  T
Q  102 aagcatgtgtctttctaaa 120  Q
    ||| ||||||| |||||||    
T  23962323 aagaatgtgtccttctaaa 23962341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 7362299 - 7362137
Alignment:
Q  49 ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 148  Q
    |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| ||||||| ||||||| |    | |||| | |||||||||||||    
T  7362299 ctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtcattctaaagtcgactccatcgcatggttgtgaactc 7362200  T
Q  149 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 211  Q
    |||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||    
T  7362199 cattaagaatgttcaatccacattcctttgtttgcttactttgatatccactaatcatgaaca 7362137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 34111598 - 34111713
Alignment:
Q  44 ccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtg 143  Q
    ||||||||||||||||||||| ||||| ||||| | |||| ||||||||||| || ||||| || |  | ||||||  || |   |||||| ||||||||    
T  34111598 ccaaactcttggtcaagtcacgtacaatcttctagtcatcttcctttaatcttcctgcaagaattttcccttctaactttggcgccatctcatggttgtg 34111697  T
Q  144 aactccattaagaata 159  Q
    ||||||||||||||||    
T  34111698 aactccattaagaata 34111713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 35243636 - 35243543
Alignment:
Q  136 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattcttg 229  Q
    ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| || ||||||||  |||| |||| ||||||    
T  35243636 tggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccactaatcatgaacaagcacccacattttcttg 35243543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 13387722 - 13387795
Alignment:
Q  136 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| |||||| ||||||    
T  13387722 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacgaatcatgaa 13387795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 16260 - 16369
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  16260 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcttcctcctttaatctaccggcaagaatgtg 16359  T
Q  111 tctttctaaa 120  Q
    || |||||||    
T  16360 tccttctaaa 16369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 12429 - 12202
Alignment:
Q  2 gtcttgtggtcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 101  Q
    ||||| || |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| |     
T  12429 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatctttctcttggtcaagtcacgtacaatcttcttgtcgtcctccattaatctaccgga 12330  T
Q  102 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 201  Q
    ||| ||||||| |||||||    | | |||  | ||||| ||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  12329 aagaatgtgtccttctaaagccagctccatggcatggttttgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 12230  T
Q  202 accatgaacatacacctacatattcttg 229  Q
    | ||||||||  |||| |||| ||||||    
T  12229 atcatgaacaagcacccacattttcttg 12202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 2039 - 1841
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  2039 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 1940  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  1939 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 1841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 33967 - 33769
Alignment:
Q  11 tcttcaaatgtaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 110  Q
    ||||||| |||| |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  33967 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 33868  T
Q  111 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 209  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  33867 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 33769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 111 - 291
Alignment:
Q  49 ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 148  Q
    |||||||||||||||| ||||| ||||||| | | |||||||| ||||| || ||| ||||||| |||||||    | | |||| | |||||||||||||    
T  111 ctcttggtcaagtcacgtacaatcttcttgtcgttctcctttagtctactcgtaagaatgtgtccttctaaagccggctccatcgcatggttgtgaactc 210  T
Q  149 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattcttg 229  Q
    |||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| ||||||    
T  211 cattaagaatgttcaatcaccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttcttg 291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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