View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_398 (Length: 237)
Name: NF7850A_low_398
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_398 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 38930797 - 38930669
Alignment:
| Q |
13 |
catcaaggttaaggttgtatactaagcctatattannnnnnnnaacaaaccaaaataaaatatattaaccacacaaatgttctcctatgcacaagaagtg |
112 |
Q |
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| T |
38930797 |
catcaaggttaaggttgtatactaagcctatatttttttttttaataaaccaaaataaaatatattaaccacacaaatgttctcctatgcacaagaagtg |
38930698 |
T |
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| Q |
113 |
tgtacataaagaacaaagtattaattaca |
141 |
Q |
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| T |
38930697 |
tgtacataaagaacaaagtattaattaca |
38930669 |
T |
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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 38930295 - 38930201
Alignment:
| Q |
143 |
taaataagagttctgcttttgataaaaatgtttagttccacatacttgagaggatttgtatactctatcgatgctttaagattttggtgaaaatg |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
38930295 |
taaataagagttctgcttttgataaaaatgtttagttccacatgcttgagaggattcgtatactctatcgatactttaagattttggtgaaaatg |
38930201 |
T |
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