View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_4 (Length: 620)
Name: NF7850A_low_4
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 1e-92; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 192 - 430
Target Start/End: Complemental strand, 30735137 - 30734895
Alignment:
| Q |
192 |
ccatgctactttattatacaccgataactataactagtgaaatagctatgt--atgaattatttaattgcttgttgtcatttagtttgcgaagcattttg |
289 |
Q |
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| T |
30735137 |
ccatgctactttattatacacagataacaataactagtgaaatagctatgtgaatgaattatttaaccgcttgttgtcctttagtttgcgaagcattttg |
30735038 |
T |
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| Q |
290 |
tttgccgttcccttaaaaaagagtttcttgtttgttggctttgattatatcgatatcatcgtgatgttgcatgcttctattatgaatatttctttttgtt |
389 |
Q |
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| T |
30735037 |
tttgccgttctcttaaaaaagagttgcttgtttgttggctttcattatatcaatgtcatcgtgatgttgcatgcttctattatgaatatttctttttgtt |
30734938 |
T |
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| Q |
390 |
tgattgcatcac--taaattctgtttgatagacatgtcataaa |
430 |
Q |
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| T |
30734937 |
tgattgcaacactataaattccgtttgatagacatgtcataaa |
30734895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 30735291 - 30735188
Alignment:
| Q |
38 |
acatcaacacctatttattataatgcattgtatttattaattaagatatgatcataagaatatgacaacaaccttttaacaaaccaatttcttaaccatt |
137 |
Q |
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| T |
30735291 |
acatcgacacctacttattataatatattgtatttatcaattaagatatgattagaggaacatgacaacaaccttttaacaaaccaatttcttaaccatt |
30735192 |
T |
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| Q |
138 |
taag |
141 |
Q |
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|||| |
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| T |
30735191 |
taag |
30735188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 536 - 598
Target Start/End: Complemental strand, 30715978 - 30715916
Alignment:
| Q |
536 |
aaactaggacaacaccactacatgtattgacaatatctacaatattgattaataaacaccaat |
598 |
Q |
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| T |
30715978 |
aaactaggacaacaccactacatatattaacaatatctacaatattgattaataaacaccaat |
30715916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 30734427 - 30734369
Alignment:
| Q |
507 |
acccaccatataaattttgagcacgatttaaactaggacaacaccactacatgtattga |
565 |
Q |
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| T |
30734427 |
acccaccatattcattttgagcacaatttaaactaggacaacaccactacatatattga |
30734369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 482 - 550
Target Start/End: Complemental strand, 30716097 - 30716028
Alignment:
| Q |
482 |
gatcatcatatt-caaactcatcaacacccaccatataaattttgagcacgatttaaactaggacaacac |
550 |
Q |
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| T |
30716097 |
gatcatcatatttcaaattcatcaacacccaccttattcattttgagcacaatttaaactaggacaacac |
30716028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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