View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_40 (Length: 427)
Name: NF7850A_low_40
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 110 - 416
Target Start/End: Complemental strand, 26496904 - 26496598
Alignment:
| Q |
110 |
ccctttataaacccatcatttaaagtcacctcgaaaattgtgctagatttacaagcgattggagacacgtgtcaacaagcgcaaggattcgaacacgtca |
209 |
Q |
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| T |
26496904 |
ccctttataaacccatcatttaaagtcgcctcgaaaatcatgctggatttaacagcgattggagacatgtgtcaacaagcgcaaggattcgaacacgtca |
26496805 |
T |
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| Q |
210 |
ctaccaacgaaaggtcatgaaatctaagtcgtctgatcatataccaaacgactcaccctagcaatcttcaaaataacccaacccgttcagacgccctcac |
309 |
Q |
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| T |
26496804 |
ctaccaacgaaaggtcatgaaatctaagtcgtttgatcatataccaaacgactcaccctagcaatcttcaaaataagccaactcgttcatacgccctcac |
26496705 |
T |
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| Q |
310 |
cacttcatcttgtctaagactcgtgcttgggagattgtagaccatctacattcctaaaggcacaggtgccctcaagaaaggctcgccaaagctcggacgt |
409 |
Q |
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|||||| ||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26496704 |
cacttcgtcttgcctaagactcgtgtttgggagattgtggaccatctacattcctaaaggcacaggtgccctcaagaaaggctcgctaaagctcggacgt |
26496605 |
T |
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| Q |
410 |
gtccctc |
416 |
Q |
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||||||| |
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| T |
26496604 |
gtccctc |
26496598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 26496999 - 26496957
Alignment:
| Q |
15 |
aaccgaagagagctcgcgtagttgaaggagaaagtccagaagc |
57 |
Q |
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| T |
26496999 |
aaccgaagagagctcgcgtcgttgaaggagaaagtccggaagc |
26496957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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