View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_400 (Length: 237)

Name: NF7850A_low_400
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_400
NF7850A_low_400
[»] chr6 (5 HSPs)
chr6 (23-237)||(25988481-25988695)
chr6 (38-120)||(25320891-25320973)
chr6 (38-120)||(26150584-26150666)
chr6 (168-237)||(25320975-25321044)
chr6 (168-237)||(26150668-26150737)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 25988481 - 25988695
Alignment:
Q  23 atccttgtttgtcttagtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtctat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25988481 atccttgtttgtcttagtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtctat 25988580  T
Q  123 aatggacatccaatgtgcttccttacttatcgctatttgcggttagcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagctt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25988581 aatggacatccaatgtgcttccttacttatcgctatttgcggttagcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagctt 25988680  T
Q  223 caactaagtctgatg 237  Q
    |||||||||||||||    
T  25988681 caactaagtctgatg 25988695  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 25320891 - 25320973
Alignment:
Q  38 agtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtct 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25320891 agtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtct 25320973  T

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Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 26150584 - 26150666
Alignment:
Q  38 agtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtct 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26150584 agtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtct 26150666  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 25320975 - 25321044
Alignment:
Q  168 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagcttcaactaagtctgatg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25320975 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaacttgagcttcaactaagtctgatg 25321044  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 26150668 - 26150737
Alignment:
Q  168 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagcttcaactaagtctgatg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26150668 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaacttgagcttcaactaagtctgatg 26150737  T

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