View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_414 (Length: 233)
Name: NF7850A_low_414
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_414 |
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| [»] chr6 (9 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 26975725 - 26975622
Alignment:
| Q |
130 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
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| T |
26975725 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagtagtgagttcacttttaatattcgag |
26975626 |
T |
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| Q |
230 |
attt |
233 |
Q |
| |
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|||| |
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| T |
26975625 |
attt |
26975622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 26636416 - 26636317
Alignment:
| Q |
134 |
ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
233 |
Q |
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||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26636416 |
ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
26636317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 26742382 - 26742283
Alignment:
| Q |
134 |
ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
233 |
Q |
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||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26742382 |
ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
26742283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 27664613 - 27664715
Alignment:
| Q |
130 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
229 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
27664613 |
agtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtctagaagtgaattcacttctgatattcgag |
27664712 |
T |
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| Q |
230 |
att |
232 |
Q |
| |
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||| |
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| T |
27664713 |
att |
27664715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 26849486 - 26849383
Alignment:
| Q |
130 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
229 |
Q |
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|||||||| || |||||||| ||||||||||||||||||||| | ||||||||||| |||| |||| ||||||||||| ||||||||||||||||||| |
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| T |
26849486 |
agtgttgtttttcccattcctccagttccaaggattcctattttccagactccatcattagattccaattctagaagtgaattcacttctgatattcgag |
26849387 |
T |
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| Q |
230 |
attt |
233 |
Q |
| |
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|||| |
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|
| T |
26849386 |
attt |
26849383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 26950517 - 26950414
Alignment:
| Q |
130 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
229 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | || ||||| ||| |||||| ||||||||||||||||||| |
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| T |
26950517 |
agtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttctgatattcgag |
26950418 |
T |
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| Q |
230 |
attt |
233 |
Q |
| |
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|||| |
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| T |
26950417 |
attt |
26950414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 26959900 - 26959797
Alignment:
| Q |
130 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
229 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||| | || ||||| ||| |||||| ||||||| ||||||||||| |
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| T |
26959900 |
agtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttttgatattcgag |
26959801 |
T |
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| Q |
230 |
attt |
233 |
Q |
| |
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|||| |
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|
| T |
26959800 |
attt |
26959797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 25074638 - 25074543
Alignment:
| Q |
133 |
gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagat |
231 |
Q |
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|||||||| |||||||| |||||||||| ||||||||||||| | ||||||| || | ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
25074638 |
gttgtcttgcccattccaccagttccaacgattcctattatgcatactccat---tatatcccaagtctagaagtgaattcacttctgaaattcgagat |
25074543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 31289042 - 31288986
Alignment:
| Q |
130 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatca |
186 |
Q |
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|||||||| |||||| |||| ||||||||||| |||||||||||| ||||||||||| |
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| T |
31289042 |
agtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatca |
31288986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 17992626 - 17992726
Alignment:
| Q |
133 |
gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt |
232 |
Q |
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|||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| || | |||||||||||||||| |||||||||||||||||||||| |
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| T |
17992626 |
gttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtctagaagtgaattcacttctgatattcgagatt |
17992725 |
T |
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| Q |
233 |
t |
233 |
Q |
| |
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| |
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| T |
17992726 |
t |
17992726 |
T |
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