View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_419 (Length: 233)
Name: NF7850A_low_419
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_419 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 53331244 - 53331016
Alignment:
| Q |
4 |
attcaactctgcaaaatgtacggtggctgccacacagaaatatctccttaatcnnnnnnnnnngacagtccaacattcattcatatcaaagaaagaaggt |
103 |
Q |
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| T |
53331244 |
attcaactctgcaaattgtacg-tggctgccacacagaaatatctccttactcttttttttttgacagtccaacattcattcatatcaaagaaagaaggt |
53331146 |
T |
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| Q |
104 |
tgatatatacagcagcagcttagcgccaagaacaggatcccaactagattatgagctacaccattacatcttttaatgaacataacactacaattaacaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53331145 |
tgatatatacagcagcagcttagcgccaagaacaggatcccaactagattatgagctacaccattacatcttttaatgaacataacactacaattaacaa |
53331046 |
T |
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| Q |
204 |
tttcagccagaatgtccttacagtcaagta |
233 |
Q |
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|||||| || |||||||||||||||||||| |
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| T |
53331045 |
tttcagacataatgtccttacagtcaagta |
53331016 |
T |
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