View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_423 (Length: 232)
Name: NF7850A_low_423
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_423 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 22679046 - 22679189
Alignment:
| Q |
68 |
attcactaagctcttgttgattatgataaatctacgcagagagggctttatgtcggtgtcatctagtacacattataccttaaccaaagaagatgttggt |
167 |
Q |
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| T |
22679046 |
attcactaagctcttattgattatgataaatctacgcagagagggctttatgtcggtgtcatctggtacacattataccttaaccaaagaagatgttggt |
22679145 |
T |
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| Q |
168 |
tgttgtttgactttttcatacacaccaattaattctgagggtat |
211 |
Q |
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| T |
22679146 |
tgttgtttgactttttcatacacaccaattaattctgaaggtat |
22679189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 22680410 - 22680482
Alignment:
| Q |
139 |
attataccttaaccaaagaagatgttggttgttgtttgactttttcatacacaccaattaattctgagggtat |
211 |
Q |
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| T |
22680410 |
attataccttgaccgaagaagatgttggttgttgtttgacttttgcatacacaccaattaattctgaaggtat |
22680482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 21227321 - 21227251
Alignment:
| Q |
141 |
tataccttaaccaaagaagatgttggttgttgtttgactttttcatacacaccaattaattctgagggtat |
211 |
Q |
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| T |
21227321 |
tataccttgaccaaagaagatgttggttgttgtttgacttttgtatacataccaattaattttgaaggtat |
21227251 |
T |
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