View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_425 (Length: 231)
Name: NF7850A_low_425
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_425 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 43106929 - 43106709
Alignment:
| Q |
7 |
cctagaaggcaaaaatagcacttatattctgatatcatatcataaaaccaacttcttagaaatgtattgtacaaaaatacattcaatataagtgttagtc |
106 |
Q |
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| T |
43106929 |
cctagaaggcaaaagtagcacttatattctgatatcatatcataaaaccaacttcgtagaaatgtattgtacaaaaatacattcaatataagtgttagtc |
43106830 |
T |
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| Q |
107 |
taatcggaa-atagaaagnnnnnnnnnntaaattacgtgtgca-aggtgcaatatcagatattgtcaaaaattgcatataaatgcacttgatgt-ggcca |
203 |
Q |
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| T |
43106829 |
taatcggaagatagaaagaaaaaaa----aaattacgtgtgcatagttgc-atatcagatattgtc-aaaattgcatataaatgcacttgatgtgggcca |
43106736 |
T |
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| Q |
204 |
caatttcaaacacattggaatttaaggg |
231 |
Q |
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| T |
43106735 |
c-atttcaaacacattggaatttaaggg |
43106709 |
T |
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