View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_434 (Length: 230)
Name: NF7850A_low_434
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_434 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 21835813 - 21835595
Alignment:
| Q |
10 |
ggatttgggataatattcaaaccatagtatatcttaaatcataaatcgaccctaattttcaagcnnnnnnnn---atcattgtatatcttaaatcataat |
106 |
Q |
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| T |
21835813 |
ggatttgggataatattcaaatcatagtatatcttaaatcataaatagaccctaatttccaagctatttttttttatcattgtatatcttaaatcataat |
21835714 |
T |
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| Q |
107 |
aaactcttcacactacaaatttttatatttgctaatcaaccttagaaaattaaattaatatacaaca---tagtttttatgggaagatatttttattaag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||| |
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| T |
21835713 |
aaactcttcacactacaaatttttatatttgctaattaaccttagaaaattaaatta--attcaacatagtagtttttatgggacgatatttttattaag |
21835616 |
T |
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| Q |
204 |
atgatatattcgtgcacttgt |
224 |
Q |
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||||||||||||||||||||| |
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| T |
21835615 |
atgatatattcgtgcacttgt |
21835595 |
T |
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