View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_435 (Length: 230)

Name: NF7850A_low_435
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_435
NF7850A_low_435
[»] chr1 (2 HSPs)
chr1 (1-224)||(15239430-15239653)
chr1 (1-224)||(34053129-34053352)
[»] chr7 (2 HSPs)
chr7 (19-194)||(49041181-49041356)
chr7 (109-224)||(31333944-31334059)
[»] chr4 (7 HSPs)
chr4 (1-212)||(46572632-46572843)
chr4 (140-209)||(26453451-26453520)
chr4 (124-224)||(19742856-19742956)
chr4 (124-224)||(19797132-19797232)
chr4 (124-224)||(19539813-19539913)
chr4 (16-71)||(26453327-26453382)
chr4 (124-206)||(19671754-19671836)
[»] chr6 (1 HSPs)
chr6 (100-224)||(27776495-27776619)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15239430 - 15239653
Alignment:
Q  1 ataaaaccatacattcctgattttaaattagcttttgagcacttttgtattcatgctggaggaagagctgttttggatgagttggagaaaaatcttgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15239430 ataaaaccatacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgagttggagaaaaatcttgatt 15239529  T
Q  101 taagtgattggcatatggaaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15239530 taagtgattggcatatggaaccatcaaggatgacactgaatagatttggtaacacttctagtagttcattgtggtatgaattggcttatactgaagctaa 15239629  T
Q  201 aggaaggattaaaaaaggtgatag 224  Q
    ||| ||||||||||||||||||||    
T  15239630 agggaggattaaaaaaggtgatag 15239653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34053129 - 34053352
Alignment:
Q  1 ataaaaccatacattcctgattttaaattagcttttgagcacttttgtattcatgctggaggaagagctgttttggatgagttggagaaaaatcttgatt 100  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||      
T  34053129 ataaaaccctacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgacc 34053228  T
Q  101 taagtgattggcatatggaaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaa 200  Q
    | |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||    
T  34053229 ttagtgattggcatatggaaccatcaagaatgacactaaatagatttggtaatacttctagtagttcattatggtatgaattggcttatactgaagctaa 34053328  T
Q  201 aggaaggattaaaaaaggtgatag 224  Q
    ||| ||||||| ||||||||||||    
T  34053329 agggaggattagaaaaggtgatag 34053352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 49041356 - 49041181
Alignment:
Q  19 gattttaaattagcttttgagcacttttgtattcatgctggaggaagagctgttttggatgagttggagaaaaatcttgatttaagtgattggcatatgg 118  Q
    ||||| |||||||||||||| || || |||||||||||||| |||||||||||| | ||||||||| |||| |||||| |  | ||||| ||||||||||    
T  49041356 gatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatgg 49041257  T
Q  119 aaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactga 194  Q
    |||| ||  ||||||| ||| |||||||||| |||||||| || |||||  | ||||||||| |||||||||||||    
T  49041256 aaccgtctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactga 49041181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 31333944 - 31334059
Alignment:
Q  109 tggcatatggaaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaagga 208  Q
    ||||||||||| || ||||| ||||||||  || | ||||| ||||| || || |||||| | ||||| ||||||||||| || ||||| || |||||||    
T  31333944 tggcatatggagccgtcaagaatgacactttatcgttttggtaacacctcgagcagttcactttggtacgaattggcttacacggaagccaatggaagga 31334043  T
Q  209 ttaaaaaaggtgatag 224  Q
    | || ||||| |||||    
T  31334044 tcaagaaaggagatag 31334059  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 46572632 - 46572843
Alignment:
Q  1 ataaaaccatacattcctgattttaaattagcttttgagcacttttgtattcatgctggaggaagagctgttttggatgagttggagaaaaatcttg-at 99  Q
    |||||||| || ||||||||||| ||  |||||||||| || ||||| || ||||| ||||| |||||||||||||||||  |||||||||| |||| |     
T  46572632 ataaaaccttatattcctgatttcaagctagcttttgaacatttttgcatccatgccggaggtagagctgttttggatgaactggagaaaaa-cttgcag 46572730  T
Q  100 ttaagtgattggcatatggaaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagcta 199  Q
     ||  |   ||||||||||| ||||| |||||||||||  || | ||||| ||||| ||||| |||||| | ||||||||||||||||| || ||||| |    
T  46572731 ctatctccatggcatatggagccatcgaggatgacactttatcgttttggaaacacatctagcagttcactttggtatgaattggcttacacagaagcca 46572830  T
Q  200 aaggaaggattaa 212  Q
    |||| || |||||    
T  46572831 aagggagaattaa 46572843  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 26453451 - 26453520
Alignment:
Q  140 atagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaaggat 209  Q
    ||||||||||||| ||||||   |||||| | ||||||||||||||||| | ||||||||||||||||||    
T  26453451 atagatttggcaatacttcttcaagttcaatttggtatgaattggcttacattgaagctaaaggaaggat 26453520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 19742956 - 19742856
Alignment:
Q  124 tcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaaggattaaaaaaggtgata 223  Q
    |||| |||||||||  |||||| ||| |||||||| ||||||||  | |||||||| ||||| |||  ||||||||||||||| || | |||||||||||    
T  19742956 tcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgata 19742857  T
Q  224 g 224  Q
    |    
T  19742856 g 19742856  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 19797132 - 19797232
Alignment:
Q  124 tcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaaggattaaaaaaggtgata 223  Q
    |||| |||||||||  |||||| ||| |||||||| ||||||||  | |||||||| ||||| |||  ||||||||||||||| || | |||||||||||    
T  19797132 tcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgata 19797231  T
Q  224 g 224  Q
    |    
T  19797232 g 19797232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 19539913 - 19539813
Alignment:
Q  124 tcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaaggattaaaaaaggtgata 223  Q
    |||| |||||||||  |||||| ||| |||||||| |||||||   | |||||||| ||||| |||  ||||||||||||||| || | |||||||||||    
T  19539913 tcaaagatgacactttatagatatggtaacacttcaagtagttttgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgata 19539814  T
Q  224 g 224  Q
    |    
T  19539813 g 19539813  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 26453327 - 26453382
Alignment:
Q  16 cctgattttaaattagcttttgagcacttttgtattcatgctggaggaagagctgt 71  Q
    |||||||||||  | ||||||||||| ||||||||||||||||| || ||||||||    
T  26453327 cctgattttaagcttgcttttgagcatttttgtattcatgctggtggtagagctgt 26453382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 19671836 - 19671754
Alignment:
Q  124 tcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaag 206  Q
    |||| |||||||||  |||||| ||| |||||||| ||||||||  | |||||||| ||||| |||  |||||||||||||||    
T  19671836 tcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaag 19671754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 27776619 - 27776495
Alignment:
Q  100 ttaagtgattggcatatggaaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagcta 199  Q
    |||||||||||||| || || || ||||| ||||||||  |||||| ||| || ||||| ||||||||  | |||||||  |||||||||  ||||||||    
T  27776619 ttaagtgattggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagcta 27776520  T
Q  200 aaggaaggattaaaaaaggtgatag 224  Q
    | |||||||| |  |||||||||||    
T  27776519 agggaaggataaggaaaggtgatag 27776495  T

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