View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_436 (Length: 230)
Name: NF7850A_low_436
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_436 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40483713 - 40483936
Alignment:
| Q |
1 |
gtagcacttgtattgattggacctggcaacattgatcaggtacgcggaattttctacattctcctaacatcttagaatgctggaattttcgtagctaata |
100 |
Q |
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| T |
40483713 |
gtagcacttgtattgattggacctggcaacattgatcaggtacgcggaattttctgcattctcctaacatcttagaatgctggaattttcgtagctaata |
40483812 |
T |
|
| Q |
101 |
cctatatttaatacaggccaaagcctttgctgagcaaacaaaatttaaaggaggtactctacagctgacctaatacctgtgctagtttctgtaatgtatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40483813 |
cctatatttaatacaggccaaagcctttgctgagcaaacaaaatttaaaggaggtactctacagctgacctaatacctgtgctagtttctgtaatgtatt |
40483912 |
T |
|
| Q |
201 |
catcttatatcagcactttaacag |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
40483913 |
catcttatatcagcactttaacag |
40483936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 17647749 - 17647852
Alignment:
| Q |
4 |
gcacttgtattgattggacctggcaacattgatcaggtacgcggaattttctacattctcctaacatcttagaatgctggaattttcgtagctaatacct |
103 |
Q |
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||||||||||||||||||| ||| |||||||||| || | || | |||| || ||||||||||| |||||||| |||| |||||| ||||||| |||| |
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| T |
17647749 |
gcacttgtattgattggacttggaaacattgatctgg-atgctggatttgcttcattctcctaatatcttagattgctaaaatttt-gtagctaccacct |
17647846 |
T |
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| Q |
104 |
atattt |
109 |
Q |
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|||||| |
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| T |
17647847 |
atattt |
17647852 |
T |
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