View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_44 (Length: 420)

Name: NF7850A_low_44
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_44
NF7850A_low_44
[»] chr2 (3 HSPs)
chr2 (7-406)||(11330392-11330779)
chr2 (132-211)||(37423059-37423137)
chr2 (7-60)||(7178122-7178175)
[»] scaffold0288 (1 HSPs)
scaffold0288 (132-250)||(9860-9979)
[»] chr1 (4 HSPs)
chr1 (146-250)||(5362808-5362908)
chr1 (130-213)||(35409005-35409088)
chr1 (146-250)||(52319052-52319157)
chr1 (133-185)||(3523174-3523226)
[»] chr5 (8 HSPs)
chr5 (136-214)||(41658759-41658837)
chr5 (124-214)||(41685853-41685942)
chr5 (132-251)||(37097872-37097987)
chr5 (144-216)||(864428-864501)
chr5 (133-170)||(17896035-17896072)
chr5 (159-232)||(38646660-38646732)
chr5 (127-179)||(29694191-29694243)
chr5 (124-160)||(32497212-32497248)
[»] chr4 (4 HSPs)
chr4 (131-181)||(6861263-6861313)
chr4 (190-242)||(33911970-33912022)
chr4 (134-213)||(33827431-33827509)
chr4 (132-185)||(20619746-20619799)
[»] scaffold0301 (1 HSPs)
scaffold0301 (161-250)||(5879-5967)
[»] chr8 (1 HSPs)
chr8 (190-242)||(35908605-35908657)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 406
Target Start/End: Complemental strand, 11330779 - 11330392
Alignment:
Q  7 atacaattcccaaagcaatgcttcggacctgcaacaaaagaattcggatattaaatgagtacagtaaaggaaaatnnnnnnnctttaggctaatagcttc 106  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||    
T  11330779 atacaattcccaaagcaatgttccggacctgcaacaaaagaattcggatattaaatgagtacagtagaggaaaataaaaaaactttaggctaatagcttc 11330680  T
Q  107 agttaaattgggttatagtcccacataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaa 206  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  11330679 agttaaattgggttatagtcccacataggtagctcggttggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccgg--- 11330583  T
Q  207 ctaacatttcccccttccctctaacaatttactaacaagtaacaactaacatttgcctatagaaaaaagttatacttattgattgaagttgctgcatgaa 306  Q
             ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330582 ---------cccccttccctctaaaaatttactaacaagtaacaactaacatttgcctatagaaaaaagttatacttattgattgaagttgctgcatgaa 11330492  T
Q  307 tgtccaatttcacttccctttagagtttgatgaattttactgctataatctaagtaggcactctacttagggtaatatctaggctaacctgctcaacata 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330491 tgtccaatttcacttccctttagagtttgatgaattttactgctataatctaagtaggcactctacttagggtaatatctaggctaacctgctcaacata 11330392  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 37423137 - 37423059
Alignment:
Q  132 taggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaac 211  Q
    |||||||||| || ||||||||||||||  ||||||||| | ||||||| | || ||| ||||||| |||||||||||||    
T  37423137 taggtagctcagttggtgagctaagggatattgaaggagttataagaagaaagtcccgggttcgat-cccggaaactaac 37423059  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 7178122 - 7178175
Alignment:
Q  7 atacaattcccaaagcaatgcttcggacctgcaacaaaagaattcggatattaa 60  Q
    ||||||||||||| |||||| | |||||||||||||||| |||  |||||||||    
T  7178122 atacaattcccaatgcaatgttccggacctgcaacaaaataatcaggatattaa 7178175  T

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Target: scaffold0288 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 9860 - 9979
Alignment:
Q  132 taggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctc-taa 230  Q
    |||||||||| || |||||||| ||||| ||||||||||||||||||||||||| ||| ||| ||  ||| ||||||||||||||||||| | ||| |||    
T  9860 taggtagctcagttggtgagctcagggatgttgaaggagatttaagaaggaggtcccgggtttgactcccagaaactaacatttccccctcctctcttaa 9959  T
Q  231 caatttactaacaagtaaca 250  Q
    |||||||||||||| |||||    
T  9960 caatttactaacaactaaca 9979  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 5362808 - 5362908
Alignment:
Q  146 ggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaacaatttactaacaag 245  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| |||| || || |||||||||||||| ||||||||||| |||||  |||||||||     
T  5362808 ggtgagctaagggaggttgaaggagatttaagaaggaggtcccgtgttcaat-cctggaaactaacattt-ccccttccctccaacaa--tactaacaac 5362903  T
Q  246 taaca 250  Q
    |||||    
T  5362904 taaca 5362908  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 35409088 - 35409005
Alignment:
Q  130 cataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacat 213  Q
    ||||| ||| |||||  |||| ||||||| ||||||||||| || ||| |||||||||||||||  ||| || |||||||||||    
T  35409088 catagatagttcggttagtgaactaagggtcgttgaaggagtttaaaggaggaggttccgagtttcatctccagaaactaacat 35409005  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 52319052 - 52319157
Alignment:
Q  146 ggtgagctaagggacgttgaaggagatttaagaaggaggt-tccgagttcgatccccggaaactaacatttcccccttcc-ctctaacaatttactaaca 243  Q
    ||||| ||||||| ||||||||||||||||||  |||||| || || |||||| | | |||||||||||||| |||| || || ||||||||| ||||||    
T  52319052 ggtgaactaaggggcgttgaaggagatttaagccggaggtctcaga-ttcgattctcagaaactaacatttctccctcccactttaacaatttgctaaca 52319150  T
Q  244 agtaaca 250  Q
    | |||||    
T  52319151 actaaca 52319157  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 3523226 - 3523174
Alignment:
Q  133 aggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggt 185  Q
    |||||||||||| |||||| ||||||||  |||||||| |||||| |||||||    
T  3523226 aggtagctcggttggtgagataagggacaatgaaggagttttaagcaggaggt 3523174  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 41658837 - 41658759
Alignment:
Q  136 tagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatt 214  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||| | |||  || ||| ||||||||||||||||    
T  41658837 tagctcggttggtgagctaagggacgtcgaaggaggtttaagaaggagttcccggatttgattcccggaaactaacatt 41658759  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 41685942 - 41685853
Alignment:
Q  124 gtcccacataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatt 214  Q
    |||||||||||||||||| ||||||||  ||||||||||  |||||||||| |||||||||| | | |||| || ||||||||||||||||    
T  41685942 gtcccacataggtagctcagtcggtgatataagggacgtcaaaggagatttgagaaggaggtcctgggttccat-cccggaaactaacatt 41685853  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 37097872 - 37097987
Alignment:
Q  132 taggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaac 231  Q
    ||||||||||||| ||||||||||||||| |||||||||||||   ||| |||||||| |||| |||| | | |||||||||||||| || |  |||| |    
T  37097872 taggtagctcggttggtgagctaagggacattgaaggagattt---aagtaggttccgggttctatcctcag-aactaacatttccctctcctatctacc 37097967  T
Q  232 aatttactaacaagtaacaa 251  Q
    ||||||| ||||| ||||||    
T  37097968 aatttacgaacaactaacaa 37097987  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 864428 - 864501
Alignment:
Q  144 tcggtgagctaa-gggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttc 216  Q
    |||||||||||| |||||| | |||||| || ||| ||||| | ||| ||| ||||||||||||||||||||||    
T  864428 tcggtgagctaaagggacgatcaaggagtttgaaggaggagatcccgggtttgatccccggaaactaacatttc 864501  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 17896035 - 17896072
Alignment:
Q  133 aggtagctcggtcggtgagctaagggacgttgaaggag 170  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  17896035 aggtagctcggttggtgagctaagggacattgaaggag 17896072  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 38646660 - 38646732
Alignment:
Q  159 acgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaaca 232  Q
    ||||||||||||||||| || ||| |||  ||||||||||| || ||||||||||||| ||||  |||||||||    
T  38646660 acgttgaaggagattta-gatggatgttttgagttcgatcctcgaaaactaacatttctccctctcctctaaca 38646732  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 29694191 - 29694243
Alignment:
Q  127 ccacataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaa 179  Q
    |||||||||||||||||| ||| | | |||| | |||||||||||||||||||    
T  29694191 ccacataggtagctcggttggtaaccaaaggaatgttgaaggagatttaagaa 29694243  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 32497248 - 32497212
Alignment:
Q  124 gtcccacataggtagctcggtcggtgagctaagggac 160  Q
    |||||||||||||||||||||  ||||||||||||||    
T  32497248 gtcccacataggtagctcggttagtgagctaagggac 32497212  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 6861263 - 6861313
Alignment:
Q  131 ataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaagg 181  Q
    |||||||| ||||| ||||||||||||||| ||||| ||||||||||||||    
T  6861263 ataggtagttcggttggtgagctaagggacattgaaagagatttaagaagg 6861313  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 33911970 - 33912022
Alignment:
Q  190 agttcgatccccggaaactaacatttcccccttccctctaacaatttactaac 242  Q
    |||| ||| ||| ||||||||||||||||||| |||||||||||| |||||||    
T  33911970 agttggattcccagaaactaacatttccccctcccctctaacaatgtactaac 33912022  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 33827431 - 33827509
Alignment:
Q  134 ggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacat 213  Q
    ||||||||| | |||| | ||||| |||||||||||| |||||| |||||||  || ||||||| |||||||||||||||    
T  33827431 ggtagctcgattggtgcgttaaggaacgttgaaggagctttaaggaggaggtctcgggttcgat-cccggaaactaacat 33827509  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 20619746 - 20619799
Alignment:
Q  132 taggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggt 185  Q
    |||| |||||||| ||||||||||||||||||| || || || |||||||||||    
T  20619746 taggcagctcggttggtgagctaagggacgttgtagcagtttgaagaaggaggt 20619799  T

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Target: scaffold0301 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 5879 - 5967
Alignment:
Q  161 gttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaacaatttactaacaagtaaca 250  Q
    ||||||||| ||||||||||||| ||    ||||||||| |||||||||| ||||| |  ||||||| |||||||||||||||| |||||    
T  5879 gttgaaggaaatttaagaaggagattttcggttcgatccacggaaactaa-atttctctattccctccaacaatttactaacaactaaca 5967  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 35908605 - 35908657
Alignment:
Q  190 agttcgatccccggaaactaacatttcccccttccctctaacaatttactaac 242  Q
    |||| ||| ||| ||||||||||||||||||| |||||||||||| |||||||    
T  35908605 agttggattcccagaaactaacatttccccctcccctctaacaatgtactaac 35908657  T

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