View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_456 (Length: 230)

Name: NF7850A_low_456
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_456
NF7850A_low_456
[»] chr5 (5 HSPs)
chr5 (1-221)||(36202839-36203059)
chr5 (18-196)||(29006218-29006398)
chr5 (6-125)||(9851621-9851740)
chr5 (36-192)||(11042983-11043139)
chr5 (55-112)||(15205199-15205256)
[»] chr8 (2 HSPs)
chr8 (27-200)||(12729135-12729308)
chr8 (5-194)||(28696261-28696450)
[»] chr2 (2 HSPs)
chr2 (22-197)||(34681294-34681469)
chr2 (16-175)||(14219075-14219233)
[»] chr3 (7 HSPs)
chr3 (6-195)||(52653523-52653712)
chr3 (55-195)||(50914636-50914776)
chr3 (6-192)||(33709572-33709752)
chr3 (31-126)||(16729628-16729721)
chr3 (128-194)||(2257455-2257521)
chr3 (148-197)||(23686022-23686071)
chr3 (148-197)||(24058259-24058308)
[»] chr4 (8 HSPs)
chr4 (5-195)||(24129520-24129710)
chr4 (28-194)||(20251147-20251312)
chr4 (5-189)||(48780039-48780222)
chr4 (14-165)||(1494959-1495110)
chr4 (22-161)||(1516526-1516664)
chr4 (101-194)||(122829-122922)
chr4 (30-104)||(1533060-1533134)
chr4 (118-165)||(1533134-1533180)
[»] chr7 (5 HSPs)
chr7 (14-189)||(12239809-12239983)
chr7 (7-201)||(1840394-1840589)
chr7 (14-176)||(24870206-24870367)
chr7 (86-166)||(34091727-34091806)
chr7 (76-139)||(24533212-24533275)
[»] chr6 (1 HSPs)
chr6 (6-192)||(28612324-28612508)
[»] scaffold0007 (2 HSPs)
scaffold0007 (5-196)||(217508-217689)
scaffold0007 (17-189)||(215646-215816)
[»] chr1 (6 HSPs)
chr1 (122-195)||(49053554-49053627)
chr1 (134-196)||(49061133-49061195)
chr1 (29-124)||(17458239-17458334)
chr1 (17-179)||(50059269-50059430)
chr1 (6-63)||(10917415-10917470)
chr1 (28-104)||(49053631-49053707)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36203059 - 36202839
Alignment:
Q  1 tgtgattttctgtctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattac 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  36203059 tgtgattttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatggttac 36202960  T
Q  101 attgattcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaattaat 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  36202959 attgattcaattgtcaagcattacaccttttctctaaaaggtctctttttaaccattgcaacttttcaaatatattttaaaaatttctctcacaattaat 36202860  T
Q  201 acaccaatgttcatgtgtctg 221  Q
    |||||||||||||||||||||    
T  36202859 acaccaatgttcatgtgtctg 36202839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 29006398 - 29006218
Alignment:
Q  18 aaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaa 117  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||| ||||  |||||||| |||||||||||||| |||||||| |||||| || ||    
T  29006398 aaagtgtctctatttatagagaaacttatgtcatttggtgaagggaaacaaccctttaaaagattttgttcatgaatggttacattgcttcaatcgtaaa 29006299  T
Q  118 gcattacact---ttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 196  Q
     |||||||||   |||| |||||||| |||| ||||||  |||||||||||| || ||||||||| ||||||||||||||||    
T  29006298 acattacacttttttttttctaaaagatctc-ttttaattattgcaacttttcaattatattttggaaatttctctcacaat 29006218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 125
Target Start/End: Original strand, 9851621 - 9851740
Alignment:
Q  6 ttttctgtctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 105  Q
    ||||||| ||||||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||  || | |||||||||| ||||||| | | ||||     
T  9851621 ttttctgcctccaaaatgtctctatttacagagaaacttatgtcttttggtgaagagaaataaccatttgacagagtttgtttatgaatggtcagattgc 9851720  T
Q  106 ttcaattgtcaagcattaca 125  Q
    ||||||||||||||| ||||    
T  9851721 ttcaattgtcaagcaataca 9851740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 11042983 - 11043139
Alignment:
Q  36 gagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattacactttttctct 135  Q
    |||||||| ||||| ||||||| ||| ||  ||||  || ||||||||||||||||||||  || ||||||| ||| | ||| |||||||| ||||||||    
T  11042983 gagaaactcatgtcctttggtgtagataatcaaccctttgaaagagtttgttcatgaatggctagattgattaaatggacaaacattacaccttttctct 11043082  T
Q  136 aaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 192  Q
    ||||| ||| | |||||||  || ||||||| |||||||||||||||||||| ||||    
T  11043083 aaaagatctttatttaaccgatgaaacttttcaaatatattttgaaaatttcactca 11043139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 15205256 - 15205199
Alignment:
Q  55 gtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaatt 112  Q
    ||||| ||||||||||  ||  |||||||||||||||||||||||||||| |||||||    
T  15205256 gtgaatagaaataaccatttgtaagagtttgttcatgaatgattacattgcttcaatt 15205199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 12729308 - 12729135
Alignment:
Q  27 ctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattacac 126  Q
    ||||||| ||||||| ||||||| | ||||||||||||| |||   ||| ||||||||| ||||||||| ||| |||| |||||||||| ||||||||||    
T  12729308 ctatttacagagaaatttatgtcctgtggtgaagagaaacaactctttagaagagtttgctcatgaatggttatattgcttcaattgtcgagcattacac 12729209  T
Q  127 tttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaattaat 200  Q
     ||||||||||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||| ||||    
T  12729208 cttttctctaaaaggtctctatttaaccattgcaactttccaaatatattttggaaatttctctcacaaataat 12729135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 28696261 - 28696450
Alignment:
Q  5 attttctgtctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 104  Q
    ||||||||  ||||||||||| |||||||| |||||||||||||  ||||||||||||||| | ||  ||| ||||||||||||||||||| ||||||||    
T  28696261 attttctgcatccaaagtgtctctatttatggagaaacttatgttctttggtgaagagaaacatccctttagaagagtttgttcatgaatggttacattg 28696360  T
Q  105 attcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 194  Q
     ||||||||| ||||||||||| ||||||||||||| ||||| |||| ||||||||||||||   | ||||||| |||||| ||||||||    
T  28696361 cttcaattgttaagcattacacattttctctaaaagatctctatttacccattgcaactttttcgaaatattttaaaaattactctcaca 28696450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 34681294 - 34681469
Alignment:
Q  22 tgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcat 121  Q
    |||||||||||||||||||| ||||||| ||||| ||||| ||| |||   ||  |||||||||||||| |||| | |||||| |||||||||||| |||    
T  34681294 tgtccctatttatagagaaatttatgtcttttggggaagaaaaacaactcttttgaagagtttgttcatcaatggtaacattgcttcaattgtcaaacat 34681393  T
Q  122 tacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 197  Q
    ||||||||||||||||||||| | | ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  34681394 tacactttttctctaaaaggtttatgtttaaccattgcaacattccaaatatattttgaaaatttctctcacaatt 34681469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 14219075 - 14219233
Alignment:
Q  16 ccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtc 115  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||| |||   || |||||||| ||||||||  |||||||||| |||||||||     
T  14219075 ccaaagtgtctctatttatagagaaacttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaccgattacattgcttcaattgta 14219174  T
Q  116 aagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatat 175  Q
    ||||||| ||| |||||||| |||| | ||| |||||| |||||||| ||| ||||||||    
T  14219175 aagcattgcacattttctct-aaagatttctatttaactattgcaacatttcaaatatat 14219233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 52653712 - 52653523
Alignment:
Q  6 ttttctgtctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 105  Q
    ||||||| ||||||||||||  | | ||||||||||||| |||| ||||||||||||| | ||||  ||||||||||||||||||||||| ||||||||     
T  52653712 ttttctgcctccaaagtgtctttgtctatagagaaacttgtgtcctttggtgaagagacacaaccatttaaaagagtttgttcatgaatggttacattgc 52653613  T
Q  106 ttcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 195  Q
     ||||||||||| || ||||| ||||| ||||||||| | | ||||| ||||||||||||  |||||||||||| |||||||||||||||    
T  52653612 atcaattgtcaaacaatacaccttttcactaaaaggtatttatttaatcattgcaactttccaaatatattttggaaatttctctcacaa 52653523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 55 - 195
Target Start/End: Original strand, 50914636 - 50914776
Alignment:
Q  55 gtgaagagaaataacctattaaaagagtttgtt-catgaatgattacattgattcaattgtcaagcattacactttttctctaaaaggtctctttttaac 153  Q
    ||||||||||| ||||| ||  ||||||||||| |||||||| || ||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  50914636 gtgaagagaaaaaacct-ttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaac 50914734  T
Q  154 cattgcaacttttgaaatatattttgaaaatttctctcacaa 195  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  50914735 cattgcaacttttcaaatatattttgaaaatttctctaacaa 50914776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 33709752 - 33709572
Alignment:
Q  6 ttttctgtctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 105  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| |||| ||||  || ||||| |||||          ||||||||     
T  33709752 ttttctgcctccaaagtgtctctatttatagagaaacttatgtcctttggtgaagggaaagaaccctttgaaagattttgt----------ttacattgc 33709663  T
Q  106 ttcaattgtcaagcattacac--tttttctctaaaaggtctctttttaaccattgcaacttttgaaata---tattttgaaaatttctctca 192  Q
    ||||||||| |||||||||||  ||||| | ||||||||||| |||||||||||||||||||  |||||   ||||||| ||||||||||||    
T  33709662 ttcaattgtaaagcattacaccttttttttataaaaggtctc-ttttaaccattgcaactttccaaatatattattttggaaatttctctca 33709572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 16729721 - 16729628
Alignment:
Q  31 ttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattacac 126  Q
    ||||||||||| | ||||| ||||||||||||||| ||| | |||||||||||| ||||||||| ||||||||| |||||| |||||| |||||||    
T  16729721 ttatagagaaagt-atgtcttttggtgaagagaaacaac-tcttaaaagagtttcttcatgaattattacattgcttcaatagtcaagtattacac 16729628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 2257455 - 2257521
Alignment:
Q  128 ttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 194  Q
    ||||||||||| ||||||| ||||| ||||||||||||| |||||||||||  |||||||| |||||    
T  2257455 ttttctctaaatggtctctatttaagcattgcaacttttcaaatatatttttgaaatttctatcaca 2257521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 23686071 - 23686022
Alignment:
Q  148 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 197  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  23686071 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 23686022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 24058308 - 24058259
Alignment:
Q  148 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 197  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  24058308 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 24058259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 24129520 - 24129710
Alignment:
Q  5 attttctgtctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 104  Q
    ||||| || ||||| |||||| |||||||||||||||||||||||||||||| |||  ||||||||  ||  ||||||||||||||||||| ||||||||    
T  24129520 attttttgcctccagagtgtctctatttatagagaaacttatgtcatttggttaaggaaaataaccatttggaagagtttgttcatgaatggttacattg 24129619  T
Q  105 attcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 195  Q
     ||||||| ||||||| ||||| ||| ||| |||| | || | |||||||||||| |||||  ||||||||||||| ||||||||||||||    
T  24129620 cttcaattatcaagcaatacacctttcctccaaaaagcctatatttaaccattgcgactttctaaatatattttgataatttctctcacaa 24129710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 20251312 - 20251147
Alignment:
Q  28 tatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattacact 127  Q
    |||||||||||||||||||||| |||||| |||| ||| |||   |||| |||||| ||||||||||  |||||||| ||||||| |||| || ||||||    
T  20251312 tatttatagagaaacttatgtcctttggtaaagaaaaacaactatttaagagagtt-gttcatgaatagttacattgtttcaattatcaaacaatacact 20251214  T
Q  128 ttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 194  Q
    ||||||||||||| ||||| |||||| |||||||||||  ||||||||||| |||||||||||||||    
T  20251213 ttttctctaaaagatctctatttaacaattgcaactttccaaatatattttaaaaatttctctcaca 20251147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 48780039 - 48780222
Alignment:
Q  5 attttctgtctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 104  Q
    |||||||| ||||||||| ||  |||||||||| ||||| | ||| ||||||| ||||||| ||||| | |||||| ||| |||||||||  ||| ||||    
T  48780039 attttctgcctccaaagtatctttatttatagataaactcaagtcttttggtgtagagaaacaacctttgaaaagaatttattcatgaatagttatattg 48780138  T
Q  105 attcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctc 189  Q
     |||||||||||| ||||| || ||||||||||||| ||| | ||||| ||||||||||||  ||||||||||||||||||||||    
T  48780139 cttcaattgtcaaacattataccttttctctaaaagatct-tgtttaatcattgcaactttccaaatatattttgaaaatttctc 48780222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 1494959 - 1495110
Alignment:
Q  14 ctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaa-taacctattaaaagagtttgttcatgaatgattacattgattcaatt 112  Q
    ||||||| |||| || ||||||||||||||||||||||||||||||  ||||  ||||| | |||  | |||||||||||||| ||| |||| ||||| |    
T  1494959 ctccaaaatgtctctttttatagagaaacttatgtcatttggtgaacggaaacaaacctttgaaagaattttgttcatgaatggttatattgcttcaact 1495058  T
Q  113 gtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttt 165  Q
    || |||| |||||| ||||||||||| |||||| |||||||||||||||||||    
T  1495059 gtaaagctttacaccttttctctaaatggtctc-ttttaaccattgcaacttt 1495110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 1516526 - 1516664
Alignment:
Q  22 tgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcat 121  Q
    |||| |||||| ||||||||||||||||||||||||||  |||||||||  || ||||| |||||||||||||| ||| ||||  ||| || | |||||     
T  1516526 tgtctctatttctagagaaacttatgtcatttggtgaacggaaataaccctttgaaagattttgttcatgaatggttatattgcgtcatttctaaagcac 1516625  T
Q  122 tacactttttctctaaaaggtctctttttaaccattgcaa 161  Q
    ||||| |||||||||||| ||||| |||||||||||||||    
T  1516626 tacaccttttctctaaaatgtctc-ttttaaccattgcaa 1516664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 122922 - 122829
Alignment:
Q  101 attgattcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 194  Q
    |||| ||||||||||||||| ||||| |||||||||||| || ||| |||||| |||||||||||| ||||||| |||| ||||||||||||||    
T  122922 attgtttcaattgtcaagcaatacacattttctctaaaatgtttctatttaactattgcaacttttcaaatatactttggaaatttctctcaca 122829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 1533060 - 1533134
Alignment:
Q  30 tttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 104  Q
    ||||||||||||||||||||||||| ||||| |||| ||||  || ||||| ||||||||| |||| ||| ||||    
T  1533060 tttatagagaaacttatgtcatttgatgaagggaaacaaccctttgaaagattttgttcataaatggttatattg 1533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 1533134 - 1533180
Alignment:
Q  118 gcattacactttttctctaaaaggtctctttttaaccattgcaacttt 165  Q
    ||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  1533134 gcattacaccttttctctaataggtctc-ttttaaccattgcaacttt 1533180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 12239809 - 12239983
Alignment:
Q  14 ctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattg 113  Q
    ||||||||||||  ||||||||||||||||||| || |||| | |||||    ||||  || |||||||||||||||||||| ||||||||  |||||||    
T  12239809 ctccaaagtgtctttatttatagagaaacttatatcctttgatcaagagccgcaaccatttgaaagagtttgttcatgaatggttacattgcatcaattg 12239908  T
Q  114 tcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctc 189  Q
    ||||||| ||||||||||| ||||||||||| | ||||||||||||||| ||| |||||||||||| |||||||||    
T  12239909 tcaagcaatacactttttcactaaaaggtctttctttaaccattgcaac-tttcaaatatattttggaaatttctc 12239983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 1840589 - 1840394
Alignment:
Q  7 tttctgtctccaaagtgtccctatttatagagaaacttatgt-catttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 105  Q
    |||||| ||||||| |||| |||||||||||||||||||||| | |||| |||||| | | ||| | ||| |||| |||||||||||||| ||||| |      
T  1840589 tttctgcctccaaaatgtctctatttatagagaaacttatgtccttttgatgaagaaagacaactttttagaagaatttgttcatgaatggttacaatac 1840490  T
Q  106 ttcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaa--tatattttgaaaatttctctcacaattaata 201  Q
    || |||| ||||| |||||||  |||  |||||||||||| | |||||||||||||||||| |||  |||||||| |||||| |||||||||||||||    
T  1840489 ttgaattatcaagaattacaccattt-actaaaaggtctc-tcttaaccattgcaacttttcaaatttatattttaaaaattactctcacaattaata 1840394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 24870367 - 24870206
Alignment:
Q  14 ctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattg 113  Q
    |||||||||||| ||||||||||||||| ||||||| |   |||||||||||||||   ||| ||||||||||| || || | ||| | || |||| |      
T  24870367 ctccaaagtgtctctatttatagagaaaattatgtcttacagtgaagagaaataactatttagaagagtttgttaataaacggttagactgcttcattga 24870268  T
Q  114 tcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatatt 176  Q
    ||| |||||||||  |||| |||||||||||  ||||||| |||||||||||| |||| ||||    
T  24870267 tcacgcattacaccctttcactaaaaggtct-attttaactattgcaacttttcaaatttatt 24870206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 34091727 - 34091806
Alignment:
Q  86 ttcatgaatgattacattgattcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaactttt 166  Q
    |||||||||||||||| |  ||||||| |||| |||||||| |||| | |||||||||| | ||||||||||| |||||||    
T  34091727 ttcatgaatgattacactacttcaattatcaaacattacacatttt-tttaaaaggtctttatttaaccattgtaactttt 34091806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 24533275 - 24533212
Alignment:
Q  76 aaagagtttgttcatgaatgattacattgattcaattgtcaagcattacactttttctctaaaa 139  Q
    |||| ||||||||||||||| |||||||| | ||||||| || |||||||  ||||||||||||    
T  24533275 aaagtgtttgttcatgaatggttacattgctacaattgttaaacattacatattttctctaaaa 24533212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 28612324 - 28612508
Alignment:
Q  6 ttttctgtctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 105  Q
    ||||||| ||| ||||||||  | |||||| ||||||||||||||||||||||||| ||| || |  ||  ||||||||||||||||||  ||| ||||     
T  28612324 ttttctgcctcgaaagtgtctatctttataaagaaacttatgtcatttggtgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgc 28612423  T
Q  106 ttcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 192  Q
    |||||||||||| || ||||| ||| |||||||||| |||| |||||||||| |||  ||| |||||||||||| ||||||||||||    
T  28612424 ttcaattgtcaaacaatacacctttgctctaaaaggcctctatttaaccattacaa--ttttaaatatattttggaaatttctctca 28612508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 217689 - 217508
Alignment:
Q  5 attttctgtctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 104  Q
    |||||||| ||| ||||||||  ||||||||||||||||||||||||||||| |||| ||| ||||| || ||||||||||| |||||||        ||    
T  217689 attttctgcctctaaagtgtc--tatttatagagaaacttatgtcatttggtaaagataaacaaccttttgaaagagtttgtccatgaat--------tg 217600  T
Q  105 attcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 196  Q
     ||  ||||||||| ||||| | ||||||||||||| ||||| |||||||||||||||||||  | ||||||| | ||||||||||||||||    
T  217599 ctttgattgtcaagaattacgcattttctctaaaagatctctatttaaccattgcaacttttttattatatttcggaaatttctctcacaat 217508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 215816 - 215646
Alignment:
Q  17 caaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtca 116  Q
    ||||||||| || | |||||| ||||||||||| |||||||||||||||| |||  ||||| |  |||||| ||||||| |||||    |||||| ||||    
T  215816 caaagtgtctctgtctatagaaaaacttatgtcctttggtgaagagaaatgaccctttaaatggatttgtttatgaatggttacaac--ttcaatcgtca 215719  T
Q  117 agcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctc 189  Q
    | |||||||  ||||||  ||||| ||||| ||||||||||||||||||  |||||||||||| |||||||||    
T  215718 aacattacatattttcttcaaaagatctctatttaaccattgcaactttctaaatatattttggaaatttctc 215646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 49053627 - 49053554
Alignment:
Q  122 tacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 195  Q
    ||||| ||||| ||||||||||| | ||||||||||||||||||  |||||||||||| |||||||||||||||    
T  49053627 tacaccttttcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaa 49053554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 49061195 - 49061133
Alignment:
Q  134 ctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 196  Q
    ||||||||||| | ||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  49061195 ctaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaat 49061133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 17458334 - 17458239
Alignment:
Q  29 atttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattac 124  Q
    ||||||||| ||||||||||| ||||||||||||||| |||   || ||||| ||||||| |||||| ||||||||  | ||||||||| ||||||    
T  17458334 atttatagataaacttatgtcctttggtgaagagaaacaactacttgaaagaatttgttcttgaatggttacattgcatgaattgtcaaacattac 17458239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 50059430 - 50059269
Alignment:
Q  17 caaagtgtccctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtca 116  Q
    |||||||||  |||||||||| || |||||||| ||| ||||| ||||| | | | ||||||||| ||||| | ||||| |||||||| ||  ||  |||    
T  50059430 caaagtgtctttatttatagaaaatcttatgtcttttagtgaacagaaaca-ctttttaaaagagcttgtttacgaatggttacattgctttgatgttca 50059332  T
Q  117 agcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttg 179  Q
    |||||||||| | ||| ||| || |||||| |||||| | ||||| |||| ||||||||||||    
T  50059331 agcattacacctcttcactataatgtctctatttaacgactgcaattttttaaatatattttg 50059269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 10917470 - 10917415
Alignment:
Q  6 ttttctgtctccaaagtgtccctatttatagagaaacttatgtcatttggtgaagaga 63  Q
    ||||||| ||||||||||||  |||||||||||||||||||||| ||| |||||||||    
T  10917470 ttttctgcctccaaagtgtc--tatttatagagaaacttatgtcctttagtgaagaga 10917415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 49053707 - 49053631
Alignment:
Q  28 tatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 104  Q
    |||||||| | ||||||||||| ||||||||||||| | || |  || |||||||||||| ||||||| ||||||||    
T  49053707 tatttatataaaaacttatgtcctttggtgaagagacacaatcatttgaaagagtttgtttatgaatggttacattg 49053631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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