View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_457 (Length: 230)
Name: NF7850A_low_457
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_457 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 4082634 - 4082846
Alignment:
| Q |
20 |
ctatcaactaaattttccaagtttagactctctctttcccctacatgtttccttccctacaactccaaaatttgagcaaccatatacggttttcttnnnn |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4082634 |
ctatcaactaaattttccaagtttagactctctctttcccctacatgtttccttccctacaactccaaaatttgagcaaccatatacggttttcttcaac |
4082733 |
T |
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| Q |
120 |
nnnnnnnnnnnnnnnnnnnnntttccatttgatcatttcccaaaac--catatatatttctataggaatttgaattccccatacacccttcaatcatcat |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
4082734 |
aaaccaaaccaaaaaacaaaatttccatttgatcatttcccaaaactatatatatatttctataggaatttcaattccccagacacccttcaatcatcat |
4082833 |
T |
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| Q |
218 |
ttgccaagaaaca |
230 |
Q |
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||||||||||||| |
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| T |
4082834 |
ttgccaagaaaca |
4082846 |
T |
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