View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_464 (Length: 230)
Name: NF7850A_low_464
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_464 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 27712257 - 27712043
Alignment:
| Q |
1 |
tcagaagaaaatcaaatgtagtccctaacataacacgtagcataaaacacatgctattaacccaaaataacaacaccgacaaccaaaattaacaaaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27712257 |
tcagaagaaaatcaaatgtagtccctaacataacacgtagcataaaacacatgctattaacccaaaataacaacaccgacaacccaaattaacaaaaata |
27712158 |
T |
|
| Q |
101 |
gtccctctcactcttcactttcacaaagtatggacaagagatacaagagcacaataacaccagtcattatatgtctttctctaaaataacacagtaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
27712157 |
gtccctctcactcttcactttcacaaagtatggacaagagatacaagagcacaataacaccattcattttatgtctttctctaaaataacacagtaacta |
27712058 |
T |
|
| Q |
201 |
ctaacccacaactcc |
215 |
Q |
| |
|
||||||||||||||| |
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|
| T |
27712057 |
ctaacccacaactcc |
27712043 |
T |
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