View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_480 (Length: 229)
Name: NF7850A_low_480
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_480 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32898837 - 32898615
Alignment:
| Q |
1 |
gaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggaca |
100 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898837 |
gaaggtgaaacaagatcaaaacttccattgctgttgctgttgaagttgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggaca |
32898738 |
T |
|
| Q |
101 |
cgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32898737 |
cgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcggtgtagggagatgaatc |
32898638 |
T |
|
| Q |
201 |
aagaagaggtggaaggtaaactg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
32898637 |
aagaagaggtggaaggtaaactg |
32898615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17415166 - 17414958
Alignment:
| Q |
1 |
gaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggaca |
100 |
Q |
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||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17415166 |
gaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttgatgttgtagatgttgtggagaaacaggaca |
17415067 |
T |
|
| Q |
101 |
cgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatc |
200 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||| | |||||||||| |||| |||||||||| ||||| ||||||||||| |
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| T |
17415066 |
cgtgctcctttagatcagtgtt------------gttggagttacacatttggtcgccgttgaatgtggcgatgctagcggcggtgtaaggagatgaatc |
17414979 |
T |
|
| Q |
201 |
aagaagaggtggaaggtaaac |
221 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
17414978 |
aagaagaggtggaagataaac |
17414958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20409651 - 20409859
Alignment:
| Q |
1 |
gaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggaca |
100 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20409651 |
gaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttgatgttgtagatgttgtggagaaacaggaca |
20409750 |
T |
|
| Q |
101 |
cgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatc |
200 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||||| | |||||||||| |||| |||||||||| ||||| ||||||||||| |
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| T |
20409751 |
cgtgctcctttagatcagtgt------------tgttggagttacacatttggtcgccgttgaatgtggcgatgctagcggcggtgtaaggagatgaatc |
20409838 |
T |
|
| Q |
201 |
aagaagaggtggaaggtaaac |
221 |
Q |
| |
|
||||||||||||||| ||||| |
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|
| T |
20409839 |
aagaagaggtggaagataaac |
20409859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46312690 - 46312482
Alignment:
| Q |
1 |
gaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggaca |
100 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46312690 |
gaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttgatgttgtagatgttgtggagaaacaggaca |
46312591 |
T |
|
| Q |
101 |
cgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatc |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| | |||||||||| |||| |||||||||| ||||| ||||||||||| |
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| T |
46312590 |
cgtgctcctttagatcagtgtt------------gttggagttacacatttggtcgccgttgaatgtggcgatgctagcggcggtgtaaggagatgaatc |
46312503 |
T |
|
| Q |
201 |
aagaagaggtggaaggtaaac |
221 |
Q |
| |
|
||||||||||||||| ||||| |
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| T |
46312502 |
aagaagaggtggaagataaac |
46312482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40169253 - 40169054
Alignment:
| Q |
1 |
gaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggaca |
100 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| |||||||||||||||||| |||||||||||||| |
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| T |
40169253 |
gaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttgatgttgt---------ggagaaacaggaca |
40169163 |
T |
|
| Q |
101 |
cgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatc |
200 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||||| | |||||||||| |||| ||||||| || ||||| ||||||||||| |
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| T |
40169162 |
cgtgctcctttagatcggtgttgttgg------------agttacacatttggtcgccgttgaatgtggcgatgctagcagcggtgtaaggagatgaatc |
40169075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 46482995 - 46483093
Alignment:
| Q |
1 |
gaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggac |
99 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||| | ||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
46482995 |
gaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtggacagagacaacatttgatgttctagatattgtggagaaataggac |
46483093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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