View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_484 (Length: 228)
Name: NF7850A_low_484
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_484 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 27731954 - 27732142
Alignment:
| Q |
19 |
atcagccacaaactctttttactgttattattattattctccttcaccttgatcttgtcattatccacgttgcttgaaactttgaactttttatgtacct |
118 |
Q |
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| T |
27731954 |
atcagccgcaaactctttttactgttattattattattctccttcaccttgatcttgtcattatccacattgcttgaaactttgaactttttatgtacct |
27732053 |
T |
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| Q |
119 |
gaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagtgtttgtgctccattaagatgttcatgatcaatgatattt |
207 |
Q |
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| T |
27732054 |
gaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagtgtttgtgctccattaagatgttcatgatcaatgatattt |
27732142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 207
Target Start/End: Original strand, 21155455 - 21155590
Alignment:
| Q |
69 |
gatcttgtcattatccacgttgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagt |
168 |
Q |
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| T |
21155455 |
gatcttgtcattatccacattgcttgaagctttgagcttttcatgtagatgaccatgatcaccaccacgagcagcagca---caagagatatggaagagt |
21155551 |
T |
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| Q |
169 |
gtttgtgctccattaagatgttcatgatcaatgatattt |
207 |
Q |
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| T |
21155552 |
gtatgtgctccattaatttgttcatgatcaatgatattt |
21155590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 207
Target Start/End: Original strand, 3073644 - 3073778
Alignment:
| Q |
69 |
gatcttgtcattatccacgttgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagt |
168 |
Q |
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| T |
3073644 |
gatcttgtcattatccacaattgttgaagctttgaactttttatgtaggtgaccatgatcagcaccacgaca----gttgtgcaagacatatcgaagagt |
3073739 |
T |
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| Q |
169 |
gtttgtgctccattaagatgttcatgatcaatgatattt |
207 |
Q |
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| T |
3073740 |
gtatatgctccattaagatgttcatgatcaatgatattt |
3073778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 21249519 - 21249473
Alignment:
| Q |
69 |
gatcttgtcattatccacgttgcttgaaactttgaactttttatgta |
115 |
Q |
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| T |
21249519 |
gatcttttcattatccacattgcttgaagctttgagctttttatgta |
21249473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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