View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_495 (Length: 227)
Name: NF7850A_low_495
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_495 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 4301855 - 4302073
Alignment:
| Q |
9 |
tggtgttgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgaggtttatatagtggggggacacatc |
108 |
Q |
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| T |
4301855 |
tggtattgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgaggtttatatagtggggggacacatc |
4301954 |
T |
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| Q |
109 |
agcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctagctgccaaaacagcgttcgaatcca |
208 |
Q |
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| T |
4301955 |
agcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctagctgccaaaacagtgttcgaatcca |
4302054 |
T |
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| Q |
209 |
ttgattacccagcggcaag |
227 |
Q |
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| T |
4302055 |
ttgattacccagcggcaag |
4302073 |
T |
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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 49112546 - 49112454
Alignment:
| Q |
92 |
tagtggggggacacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctag |
184 |
Q |
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| T |
49112546 |
tagtgggggggcacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttccttctaaccaatatgcagaattcaacatgttcctag |
49112454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 49100762 - 49100660
Alignment:
| Q |
82 |
gaggtttatatagtggggggacacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcc |
181 |
Q |
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| T |
49100762 |
gaggtttatgtagtgggaggacacatcagcaggaatacagaagacaaaggaaatgttttttcagtcccttcaaaccaatatgcagaattcaacatgttcc |
49100663 |
T |
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| Q |
182 |
tag |
184 |
Q |
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||| |
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| T |
49100662 |
tag |
49100660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 5085365 - 5085423
Alignment:
| Q |
27 |
tgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgagg |
85 |
Q |
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| T |
5085365 |
tgtattcgagaaaagaggaattgatgaaacacaacccttgaaatttgtaactgatgagg |
5085423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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