View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_499 (Length: 227)
Name: NF7850A_low_499
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_499 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 13282 - 13061
Alignment:
| Q |
1 |
agcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatgtccatattcttttgaacaccttccaggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13282 |
agcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggg |
13183 |
T |
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| Q |
101 |
gcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaat |
200 |
Q |
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| T |
13182 |
gcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaat |
13083 |
T |
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| Q |
201 |
ctgcataatccgcaaaatcttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
13082 |
ctgcataatccgcaaaatcttt |
13061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21019 - 20798
Alignment:
| Q |
1 |
agcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatgtccatattcttttgaacaccttccaggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21019 |
agcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccaggg |
20920 |
T |
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| Q |
101 |
gcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaat |
200 |
Q |
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| T |
20919 |
gcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaat |
20820 |
T |
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| Q |
201 |
ctgcataatccgcaaaatcttt |
222 |
Q |
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| T |
20819 |
ctgcataatccgcaaaatcttt |
20798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30139 - 29918
Alignment:
| Q |
1 |
agcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatgtccatattcttttgaacaccttccaggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
30139 |
agcagcatgtgacaatatcaaattgtgagctacagtataaggctcagttcctgaatttccagctgtacaatttccatattcttttgaacatcttccaggg |
30040 |
T |
|
| Q |
101 |
gcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaaat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||| |
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| T |
30039 |
gcaaaaaagccattatcataaccaagtgcagcaacaactcttggttcattgaaggtcatccaattcttaactctgtctccaaatgtcttaaaacaaaaat |
29940 |
T |
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| Q |
201 |
ctgcataatccgcaaaatcttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
29939 |
ctgcataatccgcaaaatcttt |
29918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 31639108 - 31639059
Alignment:
| Q |
143 |
ggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaa |
192 |
Q |
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||||||||||| || ||||||| |||||||||||||||||| | |||||| |
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| T |
31639108 |
ggttcattgaaggtaatccagtgcttaactctgtctccaaaagctttgaa |
31639059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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