View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_506 (Length: 226)
Name: NF7850A_low_506
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_506 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43500421 - 43500196
Alignment:
| Q |
1 |
ggattcaatggtaggtatagttctaaattgtaatcaaagaaaggaaaatcaagcaaacatgcatttatatatcattaaaccaaagaacaaaaattaaacc |
100 |
Q |
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| T |
43500421 |
ggattcaatggtaagtatagttctaaattgtaatcaaagaaaggaaaatcaagcaaacatgcatttatatatcattaaaccaaagaacaaaaattaaacc |
43500322 |
T |
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| Q |
101 |
ttttttcatcaaatatatacaacctacatgataataagaaaactttctttgcaaagagtaatgcatacctgatgcctttctttccacttggggaagaagt |
200 |
Q |
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| T |
43500321 |
ttttttcaacaaatatatacaacctacatgataataagaaaactttctttgcaaagagtaatgcatacctgatgcctttctttccacttggggaagaagt |
43500222 |
T |
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| Q |
201 |
catttcccagaagttgaaacaaatga |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43500221 |
catttcccagaagttgaaacaaatga |
43500196 |
T |
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